The use of bioacoustics in anuran taxonomy: theory, terminology, methods and recommendations for best practice

J Koehler, M Jansen, A Rodriguez, PJR Kok, LF Toledo… - Zootaxa, 2017 - biotaxa.org
Vocalizations of anuran amphibians have received much attention in studies of behavioral
ecology and physiology, but also provide informative characters for identifying and …

Selecting optimal partitioning schemes for phylogenomic datasets

R Lanfear, B Calcott, D Kainer, C Mayer… - BMC evolutionary …, 2014 - Springer
Background Partitioning involves estimating independent models of molecular evolution for
different subsets of sites in a sequence alignment, and has been shown to improve …

Patterns, mechanisms and genetics of speciation in reptiles and amphibians

KC Wollenberg Valero, JC Marshall, E Bastiaans… - Genes, 2019 - mdpi.com
In this contribution, the aspects of reptile and amphibian speciation that emerged from
research performed over the past decade are reviewed. First, this study assesses how …

The effects of partitioning on phylogenetic inference

D Kainer, R Lanfear - Molecular Biology and Evolution, 2015 - academic.oup.com
Partitioning is a commonly used method in phylogenetics that aims to accommodate
variation in substitution patterns among sites. Despite its popularity, there have been few …

Spatial biodiversity patterns of Madagascar's amphibians and reptiles

JL Brown, N Sillero, F Glaw, P Bora, DR Vieites… - PLoS …, 2016 - journals.plos.org
Madagascar has become a model region for testing hypotheses of species diversification
and biogeography, and many studies have focused on its diverse and highly endemic …

Cryptic diversity in Amazonian frogs: Integrative taxonomy of the genus Anomaloglossus (Amphibia: Anura: Aromobatidae) reveals a unique case of diversification …

JP Vacher, PJR Kok, MT Rodrigues, JD Lima… - Molecular phylogenetics …, 2017 - Elsevier
Lack of resolution on species boundaries and distribution can hamper inferences in many
fields of biology, notably biogeography and conservation biology. This is particularly true in …

Low microbiome diversity in threatened amphibians from two biodiversity hotspots

SE Greenspan, P Peloso, JA Fuentes-González… - Animal Microbiome, 2022 - Springer
Microbial diversity positively influences community resilience of the host microbiome.
However, extinction risk factors such as habitat specialization, narrow environmental …

[PDF][PDF] An integrative taxonomic revision and redefinition of Gephyromantis (Laurentomantis) malagasius based on archival DNA analysis reveals four new mantellid …

M Vences, J Köhler, A Crottini… - Vertebrate …, 2022 - vertebrate-zoology.arphahub.com
The subgenus Laurentomantis in the genus Gephyromantis contains some of the least
known amphibian species of Madagascar. The six currently valid nominal species are …

[PDF][PDF] Communicator whistles: A Trek through the taxonomy of the Boophis marojezensis complex reveals seven new, morphologically cryptic treefrogs from …

M Vences, J Köhler, CR Hutter… - Vertebrate …, 2024 - vertebrate-zoology.arphahub.com
The Malagasy stream-breeding treefrog species Boophis marojezensis contains
bioacoustically and genetically highly divergent populations. Some of these populations …

[PDF][PDF] Target-enriched DNA sequencing clarifies the identity of name-bearing types of the Gephyromantis plicifer complex and reveals a new species of mantellid frog …

M Vences, J Köhler, F Andreone, AK Craul, A Crottini… - Spixiana, 2021 - researchgate.net
With currently 16 recognised nominal species (Scherz et al. 2018), the subgenus
Duboimantis is the most species-rich subgenus in the Madagascar-endemic mantellid …