Information retrieval and text mining technologies for chemistry

M Krallinger, O Rabal, A Lourenco, J Oyarzabal… - Chemical …, 2017 - ACS Publications
Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

LIPID MAPS: update to databases and tools for the lipidomics community

MJ Conroy, RM Andrews, S Andrews… - Nucleic acids …, 2024 - academic.oup.com
Abstract LIPID MAPS (LIPID Metabolites and Pathways Strategy), www. lipidmaps. org,
provides a systematic and standardized approach to organizing lipid structural and …

CHEMDNER: The drugs and chemical names extraction challenge

M Krallinger, F Leitner, O Rabal, M Vazquez… - Journal of …, 2015 - Springer
Natural language processing (NLP) and text mining technologies for the chemical domain
(ChemNLP or chemical text mining) are key to improve the access and integration of …

PubChem chemical structure standardization

VD Hähnke, S Kim, EE Bolton - Journal of cheminformatics, 2018 - Springer
Background PubChem is a chemical information repository, consisting of three primary
databases: Substance, Compound, and BioAssay. When individual data contributors submit …

Comprehensive chemical characterization of the aerosol generated by a heated tobacco product by untargeted screening

MC Bentley, M Almstetter, D Arndt, A Knorr… - Analytical and …, 2020 - Springer
A suite of untargeted methods has been applied for the characterization of aerosol from the
Tobacco Heating System 2.2 (THS2. 2), a heated tobacco product developed by Philip …

A complex matrix characterization approach, applied to cigarette smoke, that integrates multiple analytical methods and compound identification strategies for non …

D Arndt, C Wachsmuth, C Buchholz… - … in Mass Spectrometry, 2020 - Wiley Online Library
Rationale For the characterization of the chemical composition of complex matrices such as
tobacco smoke, containing more than 6000 constituents, several analytical approaches …

Experimental and chemoinformatics study of tautomerism in a database of commercially available screening samples

L Guasch, W Yapamudiyansel, ML Peach… - Journal of Chemical …, 2016 - ACS Publications
We investigated how many cases of the same chemical sold as different products (at
possibly different prices) occurred in a prototypical large aggregated database and …

Consistency of systematic chemical identifiers within and between small-molecule databases

SA Akhondi, JA Kors, S Muresan - Journal of cheminformatics, 2012 - Springer
Background Correctness of structures and associated metadata within public and
commercial chemical databases greatly impacts drug discovery research activities such as …

Sachem: a chemical cartridge for high-performance substructure search

M Kratochvíl, J Vondrášek, J Galgonek - Journal of cheminformatics, 2018 - Springer
Background Structure search is one of the valuable capabilities of small-molecule
databases. Fingerprint-based screening methods are usually employed to enhance the …

Prediction models of retention indices for increased confidence in structural elucidation during complex matrix analysis: application to gas chromatography coupled …

E Dossin, E Martin, P Diana, A Castellon… - Analytical …, 2016 - ACS Publications
Monitoring of volatile and semivolatile compounds was performed using gas
chromatography (GC) coupled to high-resolution electron ionization mass spectrometry …