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GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins
As an important reversible lipid modification, S-palmitoylation mainly occurs at specific
cysteine residues in proteins, participates in regulating various biological processes and is …
cysteine residues in proteins, participates in regulating various biological processes and is …
Computational prediction of disordered binding regions
One of the key features of intrinsically disordered regions (IDRs) is their ability to interact
with a broad range of partner molecules. Multiple types of interacting IDRs were identified …
with a broad range of partner molecules. Multiple types of interacting IDRs were identified …
Precise prediction of phase-separation key residues by machine learning
J Sun, J Qu, C Zhao, X Zhang, X Liu, J Wang… - Nature …, 2024 - nature.com
Understanding intracellular phase separation is crucial for deciphering transcriptional
control, cell fate transitions, and disease mechanisms. However, the key residues, which …
control, cell fate transitions, and disease mechanisms. However, the key residues, which …
Omicron BA. 2 (B. 1.1. 529.2): high potential for becoming the next dominant variant
The Omicron variant has three subvariants: BA. 1 (B. 1.1. 529.1), BA. 2 (B. 1.1. 529.2), and
BA. 3 (B. 1.1. 529.3). BA. 2 is found to be able to alarmingly reinfect patients originally …
BA. 3 (B. 1.1. 529.3). BA. 2 is found to be able to alarmingly reinfect patients originally …
A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core
L Zimmermann, A Stephens, SZ Nam, D Rau… - Journal of molecular …, 2018 - Elsevier
Abstract The MPI Bioinformatics Toolkit (https://toolkit. tuebingen. mpg. de) is a free, one-stop
web service for protein bioinformatic analysis. It currently offers 34 interconnected external …
web service for protein bioinformatic analysis. It currently offers 34 interconnected external …
Critical assessment of protein intrinsic disorder prediction (CAID)‐Results of round 2
Protein intrinsic disorder (ID) is a complex and context‐dependent phenomenon that covers
a continuum between fully disordered states and folded states with long dynamic regions …
a continuum between fully disordered states and folded states with long dynamic regions …
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins
Intrinsic disorder (ID) in proteins is well-established in structural biology, with increasing
evidence for its involvement in essential biological processes. As measuring dynamic ID …
evidence for its involvement in essential biological processes. As measuring dynamic ID …
IDP-Seq2Seq: identification of intrinsically disordered regions based on sequence to sequence learning
YJ Tang, YH Pang, B Liu - Bioinformatics, 2020 - academic.oup.com
Motivation Related to many important biological functions, intrinsically disordered regions
(IDRs) are widely distributed in proteins. Accurate prediction of IDRs is critical for the protein …
(IDRs) are widely distributed in proteins. Accurate prediction of IDRs is critical for the protein …
Ketogenic diet reshapes cancer metabolism through lysine β-hydroxybutyrylation
J Qin, X Huang, S Gou, S Zhang, Y Gou, Q Zhang… - Nature …, 2024 - nature.com
Lysine β-hydroxybutyrylation (Kbhb) is a post-translational modification induced by the
ketogenic diet (KD), a diet showing therapeutic effects on multiple human diseases. Little is …
ketogenic diet (KD), a diet showing therapeutic effects on multiple human diseases. Little is …
Extant fold-switching proteins are widespread
A central tenet of biology is that globular proteins have a unique 3D structure under
physiological conditions. Recent work has challenged this notion by demonstrating that …
physiological conditions. Recent work has challenged this notion by demonstrating that …