Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Diversification of Neotropical freshwater fishes
Neotropical freshwater fishes (NFFs) constitute the most diverse continental vertebrate fauna
on Earth, with more than 6,200 named species compressed into an aquatic footprint< 0.5 …
on Earth, with more than 6,200 named species compressed into an aquatic footprint< 0.5 …
Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …
Phylogenomic subsampling and the search for phylogenetically reliable loci
N Mongiardino Koch - Molecular biology and evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …
large genome-scale data sets and used for phylogenetic inference. This step is often …
[HTML][HTML] A genomic perspective on an old question: Salmo trouts or Salmo trutta (Teleostei: Salmonidae)?
There are particular challenges in defining the taxonomic status of recently radiated groups
due to the low level of phylogenetic signal. Members of the Salmo trutta species-complex …
due to the low level of phylogenetic signal. Members of the Salmo trutta species-complex …
Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements
The family Trichomycteridae is one of the most diverse groups of freshwater catfishes in
South and Central America with eight subfamilies, 41 genera and more than 300 valid …
South and Central America with eight subfamilies, 41 genera and more than 300 valid …
Congruence between ultraconserved element‐based matrices and phylotranscriptomic datasets in the scorpion Tree of Life
CE Santibáñez‐López, AA Ojanguren‐Affilastro… - …, 2023 - Wiley Online Library
Scorpions are ancient and historically renowned for their potent venom. Traditionally, the
systematics of this group of arthropods was supported by morphological characters, until …
systematics of this group of arthropods was supported by morphological characters, until …
[HTML][HTML] Evolution of Amazonian biodiversity: A review
Amazonia (defined herein as the Amazon basin) is home to the greatest concentration of
biodiversity on Earth, providing unique genetic resources and ecological functions that …
biodiversity on Earth, providing unique genetic resources and ecological functions that …
Understanding UCEs: a comprehensive primer on using ultraconserved elements for arthropod phylogenomics
Targeted enrichment of ultraconserved elements (UCEs) has emerged as a promising tool
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …
Accelerated diversification explains the exceptional species richness of tropical characoid fishes
The Neotropics harbor the most species-rich freshwater fish fauna on the planet, but the
timing of that exceptional diversification remains unclear. Did the Neotropics accumulate …
timing of that exceptional diversification remains unclear. Did the Neotropics accumulate …