Overview of data preprocessing for machine learning applications in human microbiome research
Although metagenomic sequencing is now the preferred technique to study microbiome-host
interactions, analyzing and interpreting microbiome sequencing data presents challenges …
interactions, analyzing and interpreting microbiome sequencing data presents challenges …
Microbiome Dynamics: A Paradigm Shift in Combatting Infectious Diseases
Infectious diseases have long posed a significant threat to global health and require
constant innovation in treatment approaches. However, recent groundbreaking research has …
constant innovation in treatment approaches. However, recent groundbreaking research has …
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action
The rapid development of machine learning (ML) techniques has opened up the data-dense
field of microbiome research for novel therapeutic, diagnostic, and prognostic applications …
field of microbiome research for novel therapeutic, diagnostic, and prognostic applications …
Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification
Background Colorectal cancer (CRC) is a type of tumor caused by the uncontrolled growth
of cells in the mucosa lining the last part of the intestine. Emerging evidence underscores an …
of cells in the mucosa lining the last part of the intestine. Emerging evidence underscores an …
The salivary microbiome as a diagnostic biomarker of periodontitis: a 16S multi-batch study before and after the removal of batch effects
A Regueira-Iglesias, B Suárez-Rodríguez… - Frontiers in Cellular …, 2024 - frontiersin.org
Introduction Microbiome-based clinical applications that improve diagnosis related to oral
health are of great interest to precision dentistry. Predictive studies on the salivary …
health are of great interest to precision dentistry. Predictive studies on the salivary …
Climate change and soil health: Explainable artificial intelligence reveals microbiome response to warming
Climate change presents an unprecedented global challenge, demanding collective action
to both mitigate its effects and adapt to its consequences. Soil health and function are …
to both mitigate its effects and adapt to its consequences. Soil health and function are …
MicroHDF: predicting host phenotypes with metagenomic data using a deep forest-based framework
K Shi, Q Liu, Q Ji, Q He, XM Zhao - Briefings in Bioinformatics, 2024 - academic.oup.com
The gut microbiota plays a vital role in human health, and significant effort has been made to
predict human phenotypes, especially diseases, with the microbiota as a promising indicator …
predict human phenotypes, especially diseases, with the microbiota as a promising indicator …
A comprehensive review of the Dairy Pasteurization Process using machine learning models
P Singh, S Pandey, S Manik - Food Control, 2024 - Elsevier
Abstract Machine learning (ML) is an efficacious tool that can be employed to enhance the
pasteurization process through several means. This paper provides an analysis of the …
pasteurization process through several means. This paper provides an analysis of the …
[HTML][HTML] Supervised machine learning for microbiomics: bridging the gap between current and best practices
NK Dudek, M Chakhvadze, S Kobakhidze… - Machine Learning with …, 2024 - Elsevier
Abstract Machine learning (ML) is poised to drive innovations in clinical microbiomics, such
as in disease diagnostics and prognostics. However, the successful implementation of ML in …
as in disease diagnostics and prognostics. However, the successful implementation of ML in …
[HTML][HTML] Personalized identification of autism-related bacteria in the gut microbiome using explainable artificial intelligence
Autism spectrum disorder (ASD) affects social interaction and communication. Emerging
evidence links ASD to gut microbiome alterations, suggesting that microbial composition …
evidence links ASD to gut microbiome alterations, suggesting that microbial composition …