Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

E Lerner, T Cordes, A Ingargiola, Y Alhadid, SY Chung… - Science, 2018 - science.org
BACKGROUND Biomolecular mechanisms are typically inferred from static structural
“snapshots” obtained by x-ray crystallography, nuclear magnetic resonance (NMR) …

Conformational dynamics of intrinsically disordered proteins regulate biomolecular condensate chemistry

A Abyzov, M Blackledge, M Zweckstetter - Chemical Reviews, 2022 - ACS Publications
Motions in biomolecules are critical for biochemical reactions. In cells, many biochemical
reactions are executed inside of biomolecular condensates formed by ultradynamic …

[HTML][HTML] The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA

J Cubuk, JJ Alston, JJ Incicco, S Singh… - Nature …, 2021 - nature.com
Abstract The SARS-CoV-2 nucleocapsid (N) protein is an abundant RNA-binding protein
critical for viral genome packaging, yet the molecular details that underlie this process are …

Single-molecule FRET spectroscopy and the polymer physics of unfolded and intrinsically disordered proteins

B Schuler, A Soranno, H Hofmann… - Annual Review of …, 2016 - annualreviews.org
The properties of unfolded proteins have long been of interest because of their importance
to the protein folding process. Recently, the surprising prevalence of unstructured regions or …

The disordered N-terminal tail of SARS-CoV-2 Nucleocapsid protein forms a dynamic complex with RNA

J Cubuk, JJ Alston, JJ Incicco… - Nucleic acids …, 2024 - academic.oup.com
Abstract The SARS-CoV-2 Nucleocapsid (N) protein is responsible for condensation of the
viral genome. Characterizing the mechanisms controlling nucleic acid binding is a key step …

Single-molecule spectroscopy of protein folding dynamics—expanding scope and timescales

B Schuler, H Hofmann - Current opinion in structural biology, 2013 - Elsevier
Single-molecule spectroscopy has developed into an important method for probing protein
structure and dynamics, especially in structurally heterogeneous systems. A broad range of …

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy

A Soranno, B Buchli, D Nettels… - Proceedings of the …, 2012 - National Acad Sciences
Internal friction, which reflects the “roughness” of the energy landscape, plays an important
role for proteins by modulating the dynamics of their folding and other conformational …

Dual-wavelength metalens enables Epi-fluorescence detection from single molecules

A Barulin, Y Kim, DK Oh, J Jang, H Park, J Rho… - Nature …, 2024 - nature.com
Single molecule fluorescence spectroscopy is at the heart of molecular biophysics research
and the most sensitive biosensing assays. The growing demand for precision medicine and …

FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

E Lerner, A Barth, J Hendrix, B Ambrose, V Birkedal… - Elife, 2021 - elifesciences.org
Single-molecule FRET (smFRET) has become a mainstream technique for studying
biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by …

Coordinate-dependent diffusion in protein folding

RB Best, G Hummer - … of the National Academy of Sciences, 2010 - National Acad Sciences
Diffusion on a low-dimensional free-energy surface is a remarkably successful model for the
folding dynamics of small single-domain proteins. Complicating the interpretation of both …