[HTML][HTML] AlphaFold and implications for intrinsically disordered proteins
Accurate predictions of the three-dimensional structures of proteins from their amino acid
sequences have come of age. AlphaFold, a deep learning-based approach to protein …
sequences have come of age. AlphaFold, a deep learning-based approach to protein …
Fuzziness and frustration in the energy landscape of protein folding, function, and assembly
Conspectus Are all protein interactions fully optimized? Do suboptimal interactions
compromise specificity? What is the functional impact of frustration? Why does evolution not …
compromise specificity? What is the functional impact of frustration? Why does evolution not …
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
The structural states of proteins include ordered globular domains as well as intrinsically
disordered protein regions that exist as highly flexible conformational ensembles in …
disordered protein regions that exist as highly flexible conformational ensembles in …
MobiDB: intrinsically disordered proteins in 2021
The MobiDB database (URL: https://mobidb. org/) provides predictions and annotations for
intrinsically disordered proteins. Here, we report recent developments implemented in …
intrinsically disordered proteins. Here, we report recent developments implemented in …
Analyzing protein disorder with IUPred2A
IUPred2A is a combined prediction tool designed to discover intrinsically disordered or
conditionally disordered proteins and protein regions. Intrinsically disordered regions exist …
conditionally disordered proteins and protein regions. Intrinsically disordered regions exist …
DisProt in 2024: improving function annotation of intrinsically disordered proteins
Abstract DisProt (URL: https://disprot. org) is the gold standard database for intrinsically
disordered proteins and regions, providing valuable information about their functions. The …
disordered proteins and regions, providing valuable information about their functions. The …
LLPSDB: a database of proteins undergoing liquid–liquid phase separation in vitro
Liquid-liquid phase separation (LLPS) leads to a conversion of homogeneous solution into a
dense phase that often resembles liquid droplets, and a dilute phase. An increasing number …
dense phase that often resembles liquid droplets, and a dilute phase. An increasing number …
Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins
Intrinsic disorder is instrumental for a wide range of protein functions, and its analysis, using
computational predictions from primary structures, complements secondary and tertiary …
computational predictions from primary structures, complements secondary and tertiary …
MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins
The MobiDB (URL: mobidb. bio. unipd. it) database of protein disorder and mobility
annotations has been significantly updated and upgraded since its last major renewal in …
annotations has been significantly updated and upgraded since its last major renewal in …
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
Abstract The Database of Intrinsically Disordered Proteins (DisProt, URL: https://disprot. org)
is the major repository of manually curated annotations of intrinsically disordered proteins …
is the major repository of manually curated annotations of intrinsically disordered proteins …