A communal catalogue reveals Earth's multiscale microbial diversity

LR Thompson, JG Sanders, D McDonald, A Amir… - Nature, 2017 - nature.com
Our growing awareness of the microbial world's importance and diversity contrasts starkly
with our limited understanding of its fundamental structure. Despite recent advances in DNA …

Global observational needs and resources for marine biodiversity

G Canonico, PL Buttigieg, E Montes… - Frontiers in Marine …, 2019 - frontiersin.org
The diversity of life in the sea is critical to the health of ocean ecosystems that support living
resources and therefore essential to the economic, nutritional, recreational, and health …

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

P Arribas, C Andújar, K Bohmann, JR DeWaard… - …, 2022 - academic.oup.com
Metazoan metabarcoding is emerging as an essential strategy for inventorying biodiversity,
with diverse projects currently generating massive quantities of community-level data. The …

Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site

R Piredda, MP Tomasino, AM D'erchia… - FEMS microbiology …, 2017 - academic.oup.com
We tracked temporal changes in protist diversity at the Long Term Ecological Research
(LTER) station MareChiara in the Gulf of Naples (Mediterranean Sea) on eight dates in 2011 …

Recurrent patterns of microdiversity in a temperate coastal marine environment

M Chafee, A Fernàndez-Guerra, PL Buttigieg… - The ISME …, 2018 - academic.oup.com
Temperate coastal marine environments are replete with complex biotic and abiotic
interactions that are amplified during spring and summer phytoplankton blooms. During …

Evaluating a multigene environmental DNA approach for biodiversity assessment

AJ Drummond, RD Newcomb, TR Buckley, D **e… - …, 2015 - academic.oup.com
Background There is an increasing demand for rapid biodiversity assessment tools that
have a broad taxonomic coverage. Here we evaluate a suite of environmental DNA (eDNA) …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Molluscan genomics: the road so far and the way forward

A Gomes-dos-Santos, M Lopes-Lima, LFC Castro… - Hydrobiologia, 2020 - Springer
Mollusca is the second most species-rich phylum within the metazoans, displaying critical
economic, ecological and scientific importance. Yet, they are still largely underrepresented …

The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples

J Deck, MR Gaither, R Ewing, CE Bird, N Davies… - PLoS …, 2017 - journals.plos.org
The Genomic Observatories Metadatabase (GeOMe, http://www. geome-db. org/) is an open
access repository for geographic and ecological metadata associated with biosamples and …

The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure …

E Ransome, JB Geller, M Timmers, M Leray… - PLoS …, 2017 - journals.plos.org
The advancement of metabarcoding techniques, declining costs of high-throughput
sequencing and development of systematic sampling devices, such as autonomous reef …