Computational tools for cellular scale biophysics
Mathematical models are indispensable for disentangling the interactions through which
biological components work together to generate the forces and flows that position, mix, and …
biological components work together to generate the forces and flows that position, mix, and …
[HTML][HTML] Computational fluid–structure interaction in biology and soft robots: A review
R Pramanik, R Verstappen, PR Onck - Physics of Fluids, 2024 - pubs.aip.org
The omnipresence of fluid–structure interaction (FSI) in biological systems is indisputable—
from the vibration of leaves to the locomotion of fish, to the flying of birds, and to the …
from the vibration of leaves to the locomotion of fish, to the flying of birds, and to the …
Nonthermal fluctuations accelerate biomolecular motors
T Ariga - Biophysical Reviews, 2024 - Springer
Intracellular transport is essential for maintaining cellular function. This process is driven by
different mechanisms in prokaryotic and eukaryotic cells. In small prokaryotic cells, diffusion …
different mechanisms in prokaryotic and eukaryotic cells. In small prokaryotic cells, diffusion …
A simulation platform for slender, semiflexible, and inextensible fibers with Brownian hydrodynamics and steric repulsion
The last few years have witnessed an explosion of new numerical methods for filament
hydrodynamics. Aside from their ubiquity in biology, physics, and engineering, filaments …
hydrodynamics. Aside from their ubiquity in biology, physics, and engineering, filaments …
[PDF][PDF] Swirling Instability Mediated by Elastic and Hydrodynamic Couplings in Cytoplasmic Streaming
T Ishikawa, T Torisawa, H Wada, A Kimura - PRX Life, 2025 - APS
Cytoplasmic streaming is driven by molecular motors that move along the cytoskeleton and
entrain the surrounding fluid. In certain cell types, the direction of cytoplasmic streaming is …
entrain the surrounding fluid. In certain cell types, the direction of cytoplasmic streaming is …
Flows, self-organization, and transport in living cells
MJ Shelley - Physical Review Fluids, 2024 - APS
This paper briefly reprises, with added commentary, a talk I gave on transport and flows
within living cells at an APS-DFD meeting. Directed transport is especially important in large …
within living cells at an APS-DFD meeting. Directed transport is especially important in large …