Computational modeling, formal analysis, and tools for systems biology

E Bartocci, P Lió - PLoS computational biology, 2016 - journals.plos.org
As the amount of biological data in the public domain grows, so does the range of modeling
and analysis techniques employed in systems biology. In recent years, a number of …

Specification-based monitoring of cyber-physical systems: a survey on theory, tools and applications

E Bartocci, J Deshmukh, A Donzé, G Fainekos… - Lectures on Runtime …, 2018 - Springer
Abstract The term Cyber-Physical Systems (CPS) typically refers to engineered, physical
and biological systems monitored and/or controlled by an embedded computational core …

Logics of dynamical systems

A Platzer - 2012 27th Annual IEEE Symposium on Logic in …, 2012 - ieeexplore.ieee.org
We study the logic of dynamical systems, that is, logics and proof principles for properties of
dynamical systems. Dynamical systems are mathematical models describing how the state …

[HTML][HTML] System design of stochastic models using robustness of temporal properties

E Bartocci, L Bortolussi, L Nenzi… - Theoretical Computer …, 2015 - Elsevier
Stochastic models such as Continuous-Time Markov Chains (CTMC) and Stochastic Hybrid
Automata (SHA) are powerful formalisms to model and to reason about the dynamics of …

Satisfiability modulo odes

S Gao, S Kong, EM Clarke - 2013 Formal Methods in Computer …, 2013 - ieeexplore.ieee.org
We study SMT problems over the reals containing ordinary differential equations,. They are
important for formal verification of realistic hybrid systems and embedded software. We …

Multiple shooting, cegar-based falsification for hybrid systems

A Zutshi, JV Deshmukh, S Sankaranarayanan… - Proceedings of the 14th …, 2014 - dl.acm.org
In this paper, we present an approach for finding violations of safety properties of hybrid
systems. Existing approaches search for complete system trajectories that begin from an …

[HTML][HTML] Quantitative verification of implantable cardiac pacemakers over hybrid heart models

T Chen, M Diciolla, M Kwiatkowska… - Information and …, 2014 - Elsevier
We develop a model-based framework which supports approximate quantitative verification
of implantable cardiac pacemaker models over hybrid heart models. The framework is …

Abstraction-based parameter synthesis for multiaffine systems

S Bogomolov, C Schilling, E Bartocci, G Batt… - Hardware and Software …, 2015 - Springer
Multiaffine hybrid automata (MHA) represent a powerful formalism to model complex
dynamical systems. This formalism is particularly suited for the representation of biological …

Parameter synthesis by parallel coloured CTL model checking

L Brim, M Češka, M Demko, S Pastva… - … Computational Methods in …, 2015 - Springer
We propose a new distributed-memory parallel algorithm for parameter synthesis from CTL
hypotheses. The algorithm colours the state space transitions by different parameterisations …

[HTML][HTML] Hybrid dynamical systems logic and its refinements

A Platzer - Science of Computer Programming, 2025 - Elsevier
Hybrid dynamical systems describe the mixed discrete dynamics and continuous dynamics
of cyber-physical systems such as aircraft, cars, trains, and robots. To justify correctness …