Phylogenomics

H Philippe, F Delsuc, H Brinkmann… - Annu. Rev. Ecol. Evol …, 2005 - annualreviews.org
▪ Abstract The continuous flow of genomic data is creating unprecedented opportunities for
the reconstruction of molecular phylogenies. Access to whole-genome data means that …

Troubleshooting molecular phylogenetic analyses

MJ Sanderson, HB Shaffer - Annual review of ecology and …, 2002 - annualreviews.org
▪ Abstract The number, size, and scope of phylogenetic analyses using molecular data has
increased steadily in recent years. This has simultaneously led to a dramatic improvement in …

[HTML][HTML] Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix

MS Springer, RW Meredith, J Gatesy, CA Emerling… - PloS one, 2012 - journals.plos.org
Phylogenetic relationships, divergence times, and patterns of biogeographic descent among
primate species are both complex and contentious. Here, we generate a robust molecular …

A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach

GH Sung, JM Sung, NL Hywel-Jones… - Molecular phylogenetics …, 2007 - Elsevier
Multi-gene phylogenetic analyses were conducted to address the evolution of
Clavicipitaceae (Ascomycota). Data are presented here for approximately 5900 base pairs …

Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species

JA Tate, BB Simpson - Systematic Botany, 2003 - BioOne
A molecular phylogenetic analysis of the Andean genus Tarasa (Malvaceae) and related
genera yielded unexpected results regarding generic boundaries, the origins of polyploidy …

Between two extremes: mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference

D Rubinoff, BS Holland - Systematic biology, 2005 - academic.oup.com
Recently, the role of mitochondrial DNA (mtDNA) sequences in taxonomy and phylogenetic
inference has become contentious, and two extreme viewpoints have emerged, although, as …

Salvia (Lamiaceae) is not monophyletic: implications for the systematics, radiation, and ecological specializations of Salvia and tribe Mentheae

JB Walker, KJ Sytsma, J Treutlein… - American Journal of …, 2004 - Wiley Online Library
Salvia, with over 900 species from both the Old and New World, is the largest genus in the
Lamiaceae. Unlike most members of the subfamily Nepetoideae to which it belongs, only …

Phylogeny in cryptic weevils: molecules, morphology and new genera of western Palaearctic Cryptorhynchinae (Coleoptera: Curculionidae)

JJ Astrin, PE Stüben - Invertebrate systematics, 2008 - CSIRO Publishing
A phylogeny is presented for the western Palaearctic representatives of the weevil subfamily
Cryptorhynchinae using a combination of phenotypic and genotypic characters. This …

Staminal Evolution in the Genus Salvia (Lamiaceae): Molecular Phylogenetic Evidence for Multiple Origins of the Staminal Lever

JB Walker, KJ Sytsma - ̶Annals of Botany, 2007 - academic.oup.com
Abstract Background and Aims The genus Salvia has traditionally included any member of
the tribe Mentheae (Lamiaceae) with only two stamens and with each stamen expressing an …

Global relationships of Bemisia tabaci (Hemiptera: Aleyrodidae) revealed using Bayesian analysis of mitochondrial COI DNA sequences

LM Boykin, RG Shatters Jr, RC Rosell… - Molecular phylogenetics …, 2007 - Elsevier
Bemisia tabaci (Gennadius)(Hemiptera: Aleyrodidae) is a species complex that is one of the
most devastating agricultural pests worldwide and affects a broad range of food, fiber and …