[HTML][HTML] Next-generation sequencing for HIV drug resistance testing: laboratory, clinical, and implementation considerations

S Ávila-Ríos, N Parkin, R Swanstrom, R Paredes… - Viruses, 2020 - mdpi.com
Higher accessibility and decreasing costs of next generation sequencing (NGS), availability
of commercial kits, and development of dedicated analysis pipelines, have allowed an …

Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

ER Lee, N Parkin, C Jennings, CJ Brumme, E Enns… - Scientific reports, 2020 - nature.com
Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …

[HTML][HTML] Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genoty**

NT Parkin, S Avila-Rios, DF Bibby, CJ Brumme… - Viruses, 2020 - mdpi.com
Next-generation sequencing (NGS) is increasingly used for HIV-1 drug resistance
genoty**. NGS methods have the potential for a more sensitive detection of low …

HIV-1 drug resistance detected by next-generation sequencing among ART-naïve individuals: A systematic review and meta-analysis

F Ouyang, D Yuan, W Zhai, S Liu, Y Zhou, H Yang - Viruses, 2024 - mdpi.com
Background: There are an increasing number of articles focused on the prevalence and
clinical impact of pretreatment HIV drug resistance (PDR) detected by Sanger sequencing …

A MiSeq-HyDRA platform for enhanced HIV drug resistance genoty** and surveillance

T Taylor, ER Lee, M Nykoluk, E Enns, B Liang… - Scientific reports, 2019 - nature.com
Conventional HIV drug resistance (HIVDR) genoty** utilizes Sanger sequencing (SS)
methods, which are limited by low data throughput and the inability of detecting low …

[HTML][HTML] Pre-treatment integrase inhibitor resistance and natural polymorphisms among HIV-1 subtype C infected patients in Ethiopia

DA Arimide, ZI Szojka, K Zealiyas, A Gebreegziabxier… - Viruses, 2022 - mdpi.com
Dolutegravir-based antiretroviral therapy (ART) has been scaled up in many develo**
countries, including Ethiopia. However, subtype-dependent polymorphic differences might …

Pre-treatment HIV-drug resistance associated with virologic outcome of first-line NNRTI-antiretroviral therapy: a cohort study in Kenya

IA Beck, M Levine, CJ McGrath, S Bii, RS Milne… - …, 2020 - thelancet.com
Background Pre-treatment HIV-drug-resistance (PDR) to WHO-recommended 1st-line non-
nucleoside reverse transcriptase inhibitors (NNRTI)-based antiretroviral treatment (ART) is …