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[HTML][HTML] Next-generation sequencing for HIV drug resistance testing: laboratory, clinical, and implementation considerations
Higher accessibility and decreasing costs of next generation sequencing (NGS), availability
of commercial kits, and development of dedicated analysis pipelines, have allowed an …
of commercial kits, and development of dedicated analysis pipelines, have allowed an …
Low-abundance drug-resistant HIV-1 variants in antiretroviral drug-naive individuals: a systematic review of detection methods, prevalence, and clinical impact
Background The presence of high-abundance drug-resistant HIV-1 jeopardizes success of
antiretroviral therapy (ART). Despite numerous investigations, the clinical impact of low …
antiretroviral therapy (ART). Despite numerous investigations, the clinical impact of low …
[HTML][HTML] Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting
Metagenomic next-generation sequencing (mNGS) is an untargeted technique for
determination of microbial DNA/RNA sequences in a variety of sample types from patients …
determination of microbial DNA/RNA sequences in a variety of sample types from patients …
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing
ER Lee, N Parkin, C Jennings, CJ Brumme, E Enns… - Scientific reports, 2020 - nature.com
Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …
resistance (HIVDR) testing. Many NGS HIVDR data analysis pipelines have been …
[HTML][HTML] Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genoty**
Next-generation sequencing (NGS) is increasingly used for HIV-1 drug resistance
genoty**. NGS methods have the potential for a more sensitive detection of low …
genoty**. NGS methods have the potential for a more sensitive detection of low …
HIV-1 drug resistance detected by next-generation sequencing among ART-naïve individuals: A systematic review and meta-analysis
F Ouyang, D Yuan, W Zhai, S Liu, Y Zhou, H Yang - Viruses, 2024 - mdpi.com
Background: There are an increasing number of articles focused on the prevalence and
clinical impact of pretreatment HIV drug resistance (PDR) detected by Sanger sequencing …
clinical impact of pretreatment HIV drug resistance (PDR) detected by Sanger sequencing …
A MiSeq-HyDRA platform for enhanced HIV drug resistance genoty** and surveillance
T Taylor, ER Lee, M Nykoluk, E Enns, B Liang… - Scientific reports, 2019 - nature.com
Conventional HIV drug resistance (HIVDR) genoty** utilizes Sanger sequencing (SS)
methods, which are limited by low data throughput and the inability of detecting low …
methods, which are limited by low data throughput and the inability of detecting low …
[HTML][HTML] Pre-treatment integrase inhibitor resistance and natural polymorphisms among HIV-1 subtype C infected patients in Ethiopia
DA Arimide, ZI Szojka, K Zealiyas, A Gebreegziabxier… - Viruses, 2022 - mdpi.com
Dolutegravir-based antiretroviral therapy (ART) has been scaled up in many develo**
countries, including Ethiopia. However, subtype-dependent polymorphic differences might …
countries, including Ethiopia. However, subtype-dependent polymorphic differences might …
Dolutegravir plus lamivudine for maintenance of HIV viral suppression in adults with and without historical resistance to lamivudine: 48-week results of a non …
R De Miguel, D Rial-Crestelo… - …, 2020 - thelancet.com
Background We investigated the efficacy of a switch to dolutegravir plus lamivudine in
aviremic individuals without evidence of persistent lamivudine resistance-associated …
aviremic individuals without evidence of persistent lamivudine resistance-associated …
Pre-treatment HIV-drug resistance associated with virologic outcome of first-line NNRTI-antiretroviral therapy: a cohort study in Kenya
IA Beck, M Levine, CJ McGrath, S Bii, RS Milne… - …, 2020 - thelancet.com
Background Pre-treatment HIV-drug-resistance (PDR) to WHO-recommended 1st-line non-
nucleoside reverse transcriptase inhibitors (NNRTI)-based antiretroviral treatment (ART) is …
nucleoside reverse transcriptase inhibitors (NNRTI)-based antiretroviral treatment (ART) is …