Tracing the Evolution of Human Immunity Through Ancient DNA

E Patin, L Quintana-Murci - Annual Review of Immunology, 2024‏ - annualreviews.org
Infections have imposed strong selection pressures throughout human evolution, making the
study of natural selection's effects on immunity genes highly complementary to disease …

A geometric relationship of F2, F3 and F4-statistics with principal component analysis

BM Peter - … Transactions of the Royal Society B, 2022‏ - royalsocietypublishing.org
Principal component analysis (PCA) and F-statistics sensu Patterson are two of the most
widely used population genetic tools to study human genetic variation. Here, I derive explicit …

Applications of X-chromosome short tandem repeats for human identification: a review: applications of X-chromosome short tandem repeats for human identification

NA Mahat, AR Alwi, FM Salleh, SM Ishar… - Journal of Tropical Life …, 2023‏ - jtrolis.ub.ac.id
The forensic DNA profiling technique has tremendously contributed to forensic human
identification, an important aspect in forensic investigations. In instances whereby …

Colonialism in South Africa leaves a lasting legacy of reduced genetic diversity in Cape buffalo

L Quinn, G Garcia‐Erill, C Santander… - Molecular …, 2023‏ - Wiley Online Library
The iconic Cape buffalo has experienced several documented population declines in recent
history. These declines have been largely attributed to the late 19th century rinderpest …

[HTML][HTML] Estimating heritability explained by local ancestry and evaluating stratification bias in admixture map** from summary statistics

TF Chan, X Rui, DV Conti, M Fornage, M Graff… - The American Journal of …, 2023‏ - cell.com
The heritability explained by local ancestry markers in an admixed population (h γ 2)
provides crucial insight into the genetic architecture of a complex disease or trait. Estimation …

Localizing post-admixture adaptive variants with object detection on ancestry-painted chromosomes

I Hamid, KL Korunes, DR Schrider… - Molecular Biology and …, 2023‏ - academic.oup.com
Gene flow between previously differentiated populations during the founding of an admixed
or hybrid population has the potential to introduce adaptive alleles into the new population. If …

Genome-wide association study of osteoporosis identifies genetic risk and interactions with Dietary Approaches to Stop Hypertension diet and sugar-sweetened …

LE Fouhy, CQ Lai, LD Parnell, KL Tucker… - Journal of Bone and …, 2024‏ - academic.oup.com
Osteoporosis (OP) and low bone mass can be debilitating and costly conditions if not acted
on quickly. This disease is also difficult to diagnose as the symptoms develop unnoticed until …

On the number of genealogical ancestors tracing to the source groups of an admixed population

JA Mooney, L Agranat-Tamir, JK Pritchard… - Genetics, 2023‏ - academic.oup.com
Members of genetically admixed populations possess ancestry from multiple source groups,
and studies of human genetic admixture frequently estimate ancestry components …

Celebrating 50 years since Lewontin's apportionment of human diversity

MD Edge, S Ramachandran… - … Transactions of the …, 2022‏ - royalsocietypublishing.org
1. Introduction '85% of human genetic variation resides within populations'—Richard
Lewontin's result and sound bite, tracing to his 1972 article 'The apportionment of human …

AncestryGrapher toolkit: Python command-line pipelines to visualize global-and local-ancestry inferences from the RFMIX version 2 software

A Lisi, MC Campbell - Bioinformatics, 2024‏ - academic.oup.com
Admixture is a fundamental process that has shaped levels and patterns of genetic variation
in human populations. RFMIX version 2 (RFMIX2) utilizes a robust modeling approach to …