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[HTML][HTML] RT-PCR genoty** assays to identify SARS-CoV-2 variants in England in 2021: a design and retrospective evaluation study
N Bray, W Sopwith, M Edmunds… - The Lancet …, 2024 - thelancet.com
Background Whole-genome sequencing (WGS) is the gold standard diagnostic tool to
identify and genetically characterise emerging pathogen mutations (variants), but cost …
identify and genetically characterise emerging pathogen mutations (variants), but cost …
Tick-Borne Co-Infections: Challenges in Molecular and Serologic Diagnoses
S Sanchez-Vicente, R Tokarz - Pathogens, 2023 - mdpi.com
Co-infections are a poorly understood aspect of tick-borne diseases. In the United States
alone, nineteen different tick-borne pathogens have been identified. The majority of these …
alone, nineteen different tick-borne pathogens have been identified. The majority of these …
BosR and PlzA reciprocally regulate RpoS function to sustain Borrelia burgdorferi in ticks and mammals
AA Grassmann, R Tokarz, C Golino… - The Journal of …, 2023 - Am Soc Clin Investig
The RNA polymerase alternative σ factor RpoS in Borrelia burgdorferi (Bb), the Lyme
disease pathogen, is responsible for programmatic-positive and-negative gene regulation …
disease pathogen, is responsible for programmatic-positive and-negative gene regulation …
Turning the needle into the haystack: Culture-independent amplification of complex microbial genomes directly from their native environment
High-throughput sequencing (HTS) has revolutionized microbiology, but many microbes
exist at low abundance in their natural environment and/or are difficult, if not impossible, to …
exist at low abundance in their natural environment and/or are difficult, if not impossible, to …
Human Babesia odocoilei and Bartonella spp. co-infections in the Americas
Abstract Background In recent years, Babesia and Bartonella species co-infections in
patients with chronic, nonspecific illnesses have continued to challenge and change the …
patients with chronic, nonspecific illnesses have continued to challenge and change the …
Empirical assessment of the enrichment-based metagenomic methods in identifying diverse respiratory pathogens
X Jia, W Wang, M Wu, L Pang, C Yang, Y Ling, Z Yi… - Scientific Reports, 2024 - nature.com
Probe-based nucleic acid enrichment represents an effective route to enhance the detection
capacity of next-generation sequencing (NGS) in a set of clinically diverse and relevant …
capacity of next-generation sequencing (NGS) in a set of clinically diverse and relevant …
[HTML][HTML] Development of multiplex assays for the identification of zoonotic Babesia species
AC Calchi, CO Moore, L Bartone, E Kingston… - …, 2024 - pmc.ncbi.nlm.nih.gov
More than one-hundred Babesia species that affect animals and humans have been
described, eight of which have been associated with emerging and underdiagnosed …
described, eight of which have been associated with emerging and underdiagnosed …
Genomic characterization of Francisella tularensis and other diverse Francisella species from complex samples
Francisella tularensis, the bacterium that causes the zoonosis tularemia, and its genetic near
neighbor species, can be difficult or impossible to cultivate from complex samples. Thus …
neighbor species, can be difficult or impossible to cultivate from complex samples. Thus …
Multiple piroplasm parasites (Apicomplexa: Piroplasmida) in northeastern populations of the invasive Asian longhorned tick, Haemaphysalis longicornis Neumann …
Piroplasms, which include the agents of cattle fever and human and dog babesiosis, are a
diverse group of blood parasites of significant veterinary and medical importance. The …
diverse group of blood parasites of significant veterinary and medical importance. The …
[HTML][HTML] Update on tick-borne pathogens detection methods within ticks
Ticks are known vectors of various pathogens, including bacteria, parasites and viruses, that
impact both animal and human health. Improving knowledge of the distribution of tick-borne …
impact both animal and human health. Improving knowledge of the distribution of tick-borne …