[HTML][HTML] RT-PCR genoty** assays to identify SARS-CoV-2 variants in England in 2021: a design and retrospective evaluation study

N Bray, W Sopwith, M Edmunds… - The Lancet …, 2024 - thelancet.com
Background Whole-genome sequencing (WGS) is the gold standard diagnostic tool to
identify and genetically characterise emerging pathogen mutations (variants), but cost …

Tick-Borne Co-Infections: Challenges in Molecular and Serologic Diagnoses

S Sanchez-Vicente, R Tokarz - Pathogens, 2023 - mdpi.com
Co-infections are a poorly understood aspect of tick-borne diseases. In the United States
alone, nineteen different tick-borne pathogens have been identified. The majority of these …

BosR and PlzA reciprocally regulate RpoS function to sustain Borrelia burgdorferi in ticks and mammals

AA Grassmann, R Tokarz, C Golino… - The Journal of …, 2023 - Am Soc Clin Investig
The RNA polymerase alternative σ factor RpoS in Borrelia burgdorferi (Bb), the Lyme
disease pathogen, is responsible for programmatic-positive and-negative gene regulation …

Turning the needle into the haystack: Culture-independent amplification of complex microbial genomes directly from their native environment

OA Pilling, SA Sundararaman, D Brisson… - PLoS …, 2024 - journals.plos.org
High-throughput sequencing (HTS) has revolutionized microbiology, but many microbes
exist at low abundance in their natural environment and/or are difficult, if not impossible, to …

Human Babesia odocoilei and Bartonella spp. co-infections in the Americas

RG Maggi, AC Calchi, CO Moore, E Kingston… - Parasites & …, 2024 - Springer
Abstract Background In recent years, Babesia and Bartonella species co-infections in
patients with chronic, nonspecific illnesses have continued to challenge and change the …

Empirical assessment of the enrichment-based metagenomic methods in identifying diverse respiratory pathogens

X Jia, W Wang, M Wu, L Pang, C Yang, Y Ling, Z Yi… - Scientific Reports, 2024 - nature.com
Probe-based nucleic acid enrichment represents an effective route to enhance the detection
capacity of next-generation sequencing (NGS) in a set of clinically diverse and relevant …

[HTML][HTML] Development of multiplex assays for the identification of zoonotic Babesia species

AC Calchi, CO Moore, L Bartone, E Kingston… - …, 2024 - pmc.ncbi.nlm.nih.gov
More than one-hundred Babesia species that affect animals and humans have been
described, eight of which have been associated with emerging and underdiagnosed …

Genomic characterization of Francisella tularensis and other diverse Francisella species from complex samples

DM Wagner, DN Birdsell, RF McDonough… - PLoS …, 2022 - journals.plos.org
Francisella tularensis, the bacterium that causes the zoonosis tularemia, and its genetic near
neighbor species, can be difficult or impossible to cultivate from complex samples. Thus …

Multiple piroplasm parasites (Apicomplexa: Piroplasmida) in northeastern populations of the invasive Asian longhorned tick, Haemaphysalis longicornis Neumann …

H Herb, J González, FC Ferreira, DM Fonseca - Parasitology, 2023 - cambridge.org
Piroplasms, which include the agents of cattle fever and human and dog babesiosis, are a
diverse group of blood parasites of significant veterinary and medical importance. The …

[HTML][HTML] Update on tick-borne pathogens detection methods within ticks

E Krupa, A Dziedziech, R Paul, S Bonnet - Current Research in …, 2024 - Elsevier
Ticks are known vectors of various pathogens, including bacteria, parasites and viruses, that
impact both animal and human health. Improving knowledge of the distribution of tick-borne …