Molluscan phylogenomics requires strategically selected genomes

JD Sigwart, DR Lindberg… - … Transactions of the …, 2021 - royalsocietypublishing.org
The extraordinary diversity in molluscan body plans, and the genomic mechanisms that
enable it, remains one of the great questions of evolution. The eight distinct living taxonomic …

[HTML][HTML] Same (sea) bed different dreams: Biological community structure of the Haima seep reveals distinct biogeographic affinities

X He, T Xu, C Chen, X Liu, YX Li, Z Zhong… - The Innovation …, 2023 - the-innovation.org
Deep-sea chemosynthetic communities, including hydrothermal vents and cold seeps,
harbour hundreds of endemic species currently threatened by deep-sea mining and …

Phylogenomic analyses shed light on the relationships of chiton superfamilies and shell-eye evolution

X Liu, JD Sigwart, J Sun - Marine Life Science & Technology, 2023 - Springer
Mollusca is the second-largest animal phylum with over 100,000 extant species
representing eight classes. Across 1000 extant species in the class Polyplacophora, chitons …

Chromosome‐level reference genome for European flat oyster (Ostrea edulis L.)

MK Gundappa, C Peñaloza, T Regan… - Evolutionary …, 2022 - Wiley Online Library
Abstract The European flat oyster (Ostrea edulis L.) is a bivalve naturally distributed across
Europe, which was an integral part of human diets for centuries, until anthropogenic …

Ancestral physical stress and later immune gene family expansions shaped bivalve mollusc evolution

T Regan, L Stevens, C Penaloza… - Genome Biology and …, 2021 - academic.oup.com
Bivalve molluscs comprise 20,000 species occupying a wide diversity of marine habitats. As
filter feeders and detritivores they act as ecosystem engineers clarifying water, creating …

New mitogenomes in deep-water endemic Cocculinida and Neomphalida shed light on lineage-specific gene orders in major gastropod clades

Z Zhong, Y Lan, C Chen, Y Zhou, K Linse… - Frontiers in Ecology …, 2022 - frontiersin.org
Gastropoda is the most speciose class in Mollusca, the second largest animal phylum. The
internal relationships of major gastropod groups remain largely unsettled, partly due to the …

Chromosome-level genome assembly of the European flat oyster (Ostrea edulis) provides insights into its evolution and adaptation

X Li, Y Bai, Z Dong, C Xu, S Liu, H Yu, L Kong… - … and Physiology Part D …, 2023 - Elsevier
Abstract The European flat oyster (Ostrea edulis) is an endangered and economically
important marine bivalve species that plays a critical role in the coastal ecosystem. Here, we …

[HTML][HTML] Establishing MinION Sequencing and Genome Assembly Procedures for the Analysis of the Rooibos (Aspalathus linearis) Genome

Y Mgwatyu, S Cornelissen, P van Heusden, A Stander… - Plants, 2022 - mdpi.com
While plant genome analysis is gaining speed worldwide, few plant genomes have been
sequenced and analyzed on the African continent. Yet, this information holds the potential to …

[HTML][HTML] Functional genome annotation and transcriptome analysis of Pseudozyma hubeiensis BOT-O, an oleaginous yeast that utilizes glucose and xylose at equal …

F Mierke, DP Brink, J Norbeck, V Siewers… - Fungal Genetics and …, 2023 - Elsevier
Pseudozyma hubeiensis is a basidiomycete yeast that has the highly desirable traits for
lignocellulose valorisation of being equally efficient at utilization of glucose and xylose, and …

Mabs, a suite of tools for gene-informed genome assembly

MI Schelkunov - BMC bioinformatics, 2023 - Springer
Background Despite constantly improving genome sequencing methods, error-free
eukaryotic genome assembly has not yet been achieved. Among other kinds of problems of …