[HTML][HTML] HIV cluster and outbreak detection and response: the science and experience
AM Oster, SB Lyss, RP McClung, M Watson… - American Journal of …, 2021 - Elsevier
The Respond pillar of the Ending the HIV Epidemic in the US initiative, which consists of
activities also known as cluster and outbreak detection and response, offers a framework to …
activities also known as cluster and outbreak detection and response, offers a framework to …
HIV-TRACE (TRAnsmission Cluster Engine): a tool for large scale molecular epidemiology of HIV-1 and other rapidly evolving pathogens
In modern applications of molecular epidemiology, genetic sequence data are routinely
used to identify clusters of transmission in rapidly evolving pathogens, most notably HIV-1 …
used to identify clusters of transmission in rapidly evolving pathogens, most notably HIV-1 …
Ethical considerations in global HIV phylogenetic research
CEM Coltart, A Hoppe, M Parker, L Dawson… - The lancet HIV, 2018 - thelancet.com
Phylogenetic analysis of pathogens is an increasingly powerful way to reduce the spread of
epidemics, including HIV. As a result, phylogenetic approaches are becoming embedded in …
epidemics, including HIV. As a result, phylogenetic approaches are becoming embedded in …
Identifying clusters of recent and rapid HIV transmission through analysis of molecular surveillance data
AM Oster, AM France, N Panneer… - JAIDS Journal of …, 2018 - journals.lww.com
Background: Detecting recent and rapid spread of HIV can help prioritize prevention and
early treatment for those at highest risk of transmission. HIV genetic sequence data can …
early treatment for those at highest risk of transmission. HIV genetic sequence data can …
Differential privacy from locally adjustable graph algorithms: k-core decomposition, low out-degree ordering, and densest subgraphs
Differentially private algorithms allow large-scale data analytics while preserving user
privacy. Designing such algorithms for graph data is gaining importance with the growth of …
privacy. Designing such algorithms for graph data is gaining importance with the growth of …
A comprehensive genomics solution for HIV surveillance and clinical monitoring in low-income settings
Viral genetic sequencing can be used to monitor the spread of HIV drug resistance, identify
appropriate antiretroviral regimes, and characterize transmission dynamics. Despite …
appropriate antiretroviral regimes, and characterize transmission dynamics. Despite …
Growth of HIV-1 molecular transmission clusters in New York City
Background HIV-1 genetic sequences can be used to infer viral transmission history and
dynamics. Throughout the United States, HIV-1 sequences from drug resistance testing are …
dynamics. Throughout the United States, HIV-1 sequences from drug resistance testing are …
Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting
J Keehner, SR Abeles, CA Longhurst… - Clinical Infectious …, 2024 - academic.oup.com
Background Infection prevention (IP) measures are designed to mitigate the transmission of
pathogens in healthcare. Using large-scale viral genomic and social network analyses, we …
pathogens in healthcare. Using large-scale viral genomic and social network analyses, we …
HIV transmission networks among transgender women in Los Angeles County, CA, USA: a phylogenetic analysis of surveillance data
Background Transgender women are among the groups at highest risk for HIV infection, with
a prevalence of 27· 7% in the USA; and despite this known high risk, undiagnosed infection …
a prevalence of 27· 7% in the USA; and despite this known high risk, undiagnosed infection …
Rapid identification and investigation of an HIV risk network among people who inject drugs–Miami, FL, 2018
Prevention of HIV outbreaks among people who inject drugs remains a challenge to ending
the HIV epidemic in the United States. The first legal syringe services program (SSP) in …
the HIV epidemic in the United States. The first legal syringe services program (SSP) in …