Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics

T Nojima, NJ Proudfoot - Nature reviews Molecular cell biology, 2022 - nature.com
Mammalian genomes express two principal gene categories through RNA polymerase II-
mediated transcription: protein-coding transcription units and non-coding RNA transcription …

Epigenome plasticity in plants

JPB Lloyd, R Lister - Nature Reviews Genetics, 2022 - nature.com
Plant intra-individual and inter-individual variation can be determined by the epigenome, a
set of covalent modifications of DNA and chromatin that can alter genome structure and …

RNA-directed DNA methylation

RM Erdmann, CL Picard - PLoS genetics, 2020 - journals.plos.org
RNA-directed DNA methylation (RdDM) is a biological process in which non-coding RNA
molecules direct the addition of DNA methylation to specific DNA sequences. The RdDM …

Principles, applications, and biosafety of plant genome editing using CRISPR-Cas9

K El-Mounadi, ML Morales-Floriano… - Frontiers in plant …, 2020 - frontiersin.org
The terms genome engineering, genome editing, and gene editing, refer to modifications
(insertions, deletions, substitutions) in the genome of a living organism. The most widely …

Nurse cell–derived small RNAs define paternal epigenetic inheritance in Arabidopsis

J Long, J Walker, W She, B Aldridge, H Gao, S Deans… - Science, 2021 - science.org
INTRODUCTION Epigenetic modifications to chromatin, such as the methylation of DNA
cytosines, carry regulatory information across the generations in plants and animals …

DNA methylation in plants: mechanisms and tools for targeted manipulation

J Gallego‐Bartolomé - New Phytologist, 2020 - Wiley Online Library
DNA methylation is an epigenetic mark that regulates multiple processes, such as gene
expression and genome stability. Mutants and pharmacological treatments have been …

Epigenetics for crop improvement in times of global change

I Kakoulidou, EV Avramidou, M Baránek… - Biology, 2021 - mdpi.com
Simple Summary Research on plant epigenetics aims to understand how endogenous,
biotic, and abiotic factors regulate plant development and growth independent of changes in …

Genome editing in plants using the compact editor CasΦ

Z Li, Z Zhong, Z Wu, P Pausch… - Proceedings of the …, 2023 - National Acad Sciences
Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins
(CRISPR-Cas) systems have been developed as important tools for plant genome …

DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis

Z Zhong, S Feng, SH Duttke… - Proceedings of the …, 2021 - National Acad Sciences
DNA methylation is a major epigenetic modification found across species and has a
profound impact on many biological processes. However, its influence on chromatin …

Virus-induced gene silencing (VIGS): a powerful tool for crop improvement and its advancement towards epigenetics

S Zulfiqar, MA Farooq, T Zhao, PP Wang… - International journal of …, 2023 - mdpi.com
Virus-induced gene silencing (VIGS) is an RNA-mediated reverse genetics technology that
has evolved into an indispensable approach for analyzing the function of genes. It …