Ancient DNA analysis

L Orlando, R Allaby, P Skoglund… - Nature reviews …, 2021 - nature.com
Although the first ancient DNA molecules were extracted more than three decades ago, the
first ancient nuclear genomes could only be characterized after high-throughput sequencing …

Harnessing the power of RADseq for ecological and evolutionary genomics

KR Andrews, JM Good, MR Miller, G Luikart… - Nature Reviews …, 2016 - nature.com
High-throughput techniques based on restriction site-associated DNA sequencing (RADseq)
are enabling the low-cost discovery and genoty** of thousands of genetic markers for any …

Population genomics of bronze age Eurasia

ME Allentoft, M Sikora, KG Sjögren, S Rasmussen… - Nature, 2015 - nature.com
Abstract The Bronze Age of Eurasia (around 3000–1000 bc) was a period of major cultural
changes. However, there is debate about whether these changes resulted from the …

The prehistoric peopling of Southeast Asia

H McColl, F Racimo, L Vinner, F Demeter, T Gakuhari… - Science, 2018 - science.org
The human occupation history of Southeast Asia (SEA) remains heavily debated. Current
evidence suggests that SEA was occupied by Hòabìnhian hunter-gatherers until~ 4000 …

Neandertal and Denisovan DNA from Pleistocene sediments

V Slon, C Hopfe, CL Weiß, F Mafessoni… - Science, 2017 - science.org
Although a rich record of Pleistocene human-associated archaeological assemblages
exists, the scarcity of hominin fossils often impedes the understanding of which hominins …

[HTML][HTML] Investigative genetic genealogy: Current methods, knowledge and practice

D Kling, C Phillips, D Kennett, A Tillmar - Forensic Science International …, 2021 - Elsevier
Investigative genetic genealogy (IGG) has emerged as a new, rapidly growing field of
forensic science. We describe the process whereby dense SNP data, commonly comprising …

The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon

S Zarrillo, N Gaikwad, C Lanaud, T Powis… - Nature ecology & …, 2018 - nature.com
Cacao (Theobroma cacao L.) is an important economic crop, yet studies of its domestication
history and early uses are limited. Traditionally, cacao is thought to have been first …

Partial uracil–DNA–glycosylase treatment for screening of ancient DNA

N Rohland, E Harney, S Mallick… - … Transactions of the …, 2015 - royalsocietypublishing.org
The challenge of sequencing ancient DNA has led to the development of specialized
laboratory protocols that have focused on reducing contamination and maximizing the …

Beyond biodiversity: Can environmental DNA (eDNA) cut it as a population genetics tool?

CIM Adams, M Knapp, NJ Gemmell, GJ Jeunen… - Genes, 2019 - mdpi.com
Population genetic data underpin many studies of behavioral, ecological, and evolutionary
processes in wild populations and contribute to effective conservation management …

Targeted capture in evolutionary and ecological genomics

MR Jones, JM Good - Molecular ecology, 2016 - Wiley Online Library
The rapid expansion of next‐generation sequencing has yielded a powerful array of tools to
address fundamental biological questions at a scale that was inconceivable just a few years …