Towards new horizons: characterization, classification and implications of the tumour antigenic repertoire

SP Haen, MW Löffler, HG Rammensee… - Nature Reviews Clinical …, 2020 - nature.com
Immune-checkpoint inhibition provides an unmatched level of durable clinical efficacy in
various malignancies. Such therapies promote the activation of antigen-specific T cells …

[HTML][HTML] The impact of immunopeptidomics: From basic research to clinical implementation

IE Shapiro, M Bassani-Sternberg - Seminars in immunology, 2023 - Elsevier
The immunopeptidome is the set of peptides presented by the major histocompatibility
complex (MHC) molecules, in humans also known as the human leukocyte antigen (HLA) …

Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics

AW Purcell, SH Ramarathinam, N Ternette - Nature protocols, 2019 - nature.com
Peptide antigens bound to molecules encoded by the major histocompatibility complex
(MHC) and presented on the cell surface form the targets of T lymphocytes. This critical arm …

Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

M Bassani-Sternberg, E Bräunlein, R Klar… - Nature …, 2016 - nature.com
Although mutations may represent attractive targets for immunotherapy, direct identification
of mutated peptide ligands isolated from human leucocyte antigens (HLA) on the surface of …

Phosphoproteomics in the age of rapid and deep proteome profiling

NM Riley, JJ Coon - Analytical chemistry, 2016 - ACS Publications
Protein phosphorylation is a post-translational modification (PTM) that orchestrates a diverse
array of cellular processes. Because this modification serves as a rapid and reversible …

The role of neoantigens in naturally occurring and therapeutically induced immune responses to cancer

JP Ward, MM Gubin, RD Schreiber - Advances in immunology, 2016 - Elsevier
Definitive experimental evidence from mouse cancer models and strong correlative clinical
data gave rise to the Cancer Immunoediting concept that explains the dual host-protective …

Metalloproteomics for biomedical research: methodology and applications

Y Zhou, H Li, H Sun - Annual review of biochemistry, 2022 - annualreviews.org
Metals are essential components in life processes and participate in many important
biological processes. Dysregulation of metal homeostasis is correlated with many diseases …

The role of electron transfer dissociation in modern proteomics

NM Riley, JJ Coon - Analytical Chemistry, 2018 - ACS Publications
(MS) and MS-driven proteomics have continued to develop as the premier tools for
characterizing proteome composition, structure, and function. 2 The new era of proteomics …

Mass spectrometry-based antigen discovery for cancer immunotherapy

M Bassani-Sternberg, G Coukos - Current opinion in immunology, 2016 - Elsevier
Highlights•Immunopeptidomics analysis reveals the in vivo antigenic repertoire of
tumors.•Shared cancer antigens and private neo-epitopes are detected by …

Advanced nanomaterials as sample technique for bio-analysis

N Sun, H Yu, H Wu, X Shen, C Deng - TrAC Trends in Analytical Chemistry, 2021 - Elsevier
The biological compositions including cells, proteins/peptides, nucleic acids, extracellular
vesicles (EVs) and metabolites are no doubt closely related to almost all physiological and …