[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
The ecologist's field guide to sequence‐based identification of biodiversity
The past 100 years of ecological research has seen substantial progress in understanding
the natural world and likely effects of change, whether natural or anthropogenic. Traditional …
the natural world and likely effects of change, whether natural or anthropogenic. Traditional …
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
The purpose of this review is to present the most common and emerging DNA‐based
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
methods used to generate data for biodiversity and biomonitoring studies. As environmental …
Towards next‐generation biodiversity assessment using DNA metabarcoding
Virtually all empirical ecological studies require species identification during data collection.
DNA metabarcoding refers to the automated identification of multiple species from a single …
DNA metabarcoding refers to the automated identification of multiple species from a single …
Next‐generation sequencing technologies for environmental DNA research
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …
biological science. The analysis of environmental DNA through the use of specific gene …
Environmental DNA metabarcoding of lake fish communities reflects long‐term data from established survey methods
Organisms continuously release DNA into their environments via shed cells, excreta,
gametes and decaying material. Analysis of this 'environmental DNA'(eDNA) is …
gametes and decaying material. Analysis of this 'environmental DNA'(eDNA) is …
Characterization of the 18S rRNA gene for designing universal eukaryote specific primers
High throughput sequencing technology has great promise for biodiversity studies.
However, an underlying assumption is that the primers used in these studies are universal …
However, an underlying assumption is that the primers used in these studies are universal …
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
Traditional biodiversity assessment is costly in time, money and taxonomic expertise.
Moreover, data are frequently collected in ways (eg visual bird lists) that are unsuitable for …
Moreover, data are frequently collected in ways (eg visual bird lists) that are unsuitable for …
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
Plant species richness and the presence of certain influential species (sampling effect) drive
the stability and functionality of ecosystems as well as primary production and biomass of …
the stability and functionality of ecosystems as well as primary production and biomass of …