[HTML][HTML] Machine learning in nutrient management: A review
In agriculture, precise fertilization and effective nutrient management are critical. Machine
learning (ML) has recently been increasingly used to develop decision support tools for …
learning (ML) has recently been increasingly used to develop decision support tools for …
Concepts and methods for transcriptome-wide prediction of chemical messenger RNA modifications with machine learning
The expanding field of epitranscriptomics might rival the epigenome in the diversity of
biological processes impacted. In recent years, the development of new high-throughput …
biological processes impacted. In recent years, the development of new high-throughput …
EMDLP: Ensemble multiscale deep learning model for RNA methylation site prediction
H Wang, H Liu, T Huang, G Li, L Zhang, Y Sun - BMC bioinformatics, 2022 - Springer
Background Recent research recommends that epi-transcriptome regulation through post-
transcriptional RNA modifications is essential for all sorts of RNA. Exact identification of RNA …
transcriptional RNA modifications is essential for all sorts of RNA. Exact identification of RNA …
Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach
Dihydrouridine (DHU, D) is one of the most abundant post-transcriptional uridine
modifications found in tRNA, mRNA, and snoRNA, closely associated with disease …
modifications found in tRNA, mRNA, and snoRNA, closely associated with disease …
[HTML][HTML] Novel insights into noncanonical open reading frames in cancer
Y Liu, S Zeng, M Wu - Biochimica et Biophysica Acta (BBA)-Reviews on …, 2022 - Elsevier
With technological advances, previously neglected noncanonical open reading frames
(nORFs) are drawing ever-increasing attention. However, the translation potential of …
(nORFs) are drawing ever-increasing attention. However, the translation potential of …
EMDL-ac4C: identifying N4-acetylcytidine based on ensemble two-branch residual connection DenseNet and attention
J Jia, Z Wei, X Cao - Frontiers in Genetics, 2023 - frontiersin.org
Introduction: N4-acetylcytidine (ac4C) is a critical acetylation modification that has an
essential function in protein translation and is associated with a number of human diseases …
essential function in protein translation and is associated with a number of human diseases …
Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation
As the most pervasive epigenetic mark present on mRNA and lncRNA, N6-methyladenosine
(m6A) RNA methylation regulates all stages of RNA life in various biological processes and …
(m6A) RNA methylation regulates all stages of RNA life in various biological processes and …
Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes
Post-and co-transcriptional RNA modifications are found to play various roles in regulating
essential biological processes at all stages of RNA life. Precise identification of RNA …
essential biological processes at all stages of RNA life. Precise identification of RNA …
Fitness Landscapes and Evolution of Catalytic RNA
The relationship between genotype and phenotype, or the fitness landscape, is the
foundation of genetic engineering and evolution. However, map** fitness landscapes …
foundation of genetic engineering and evolution. However, map** fitness landscapes …
Dynamic regulation and key roles of ribonucleic acid methylation
J Zou, H Liu, W Tan, Y Chen, J Dong, S Bai… - Frontiers in Cellular …, 2022 - frontiersin.org
Ribonucleic acid (RNA) methylation is the most abundant modification in biological systems,
accounting for 60% of all RNA modifications, and affects multiple aspects of RNA (including …
accounting for 60% of all RNA modifications, and affects multiple aspects of RNA (including …