Sequencing our way towards understanding global eukaryotic biodiversity

HM Bik, DL Porazinska, S Creer, JG Caporaso… - Trends in ecology & …, 2012 - cell.com
Microscopic eukaryotes are abundant, diverse and fill critical ecological roles across every
ecosystem on Earth, yet there is a well-recognized gap in understanding of their global …

Microbial ecology of oxygen minimum zones amidst ocean deoxygenation

AM Long, SK Jurgensen, AR Petchel… - Frontiers in …, 2021 - frontiersin.org
Oxygen minimum zones (OMZs) have substantial effects on the global ecology and
biogeochemical processes of marine microbes. However, the diversity and activity of OMZ …

Eukaryotic plankton diversity in the sunlit ocean

C De Vargas, S Audic, N Henry, J Decelle, F Mahé… - Science, 2015 - science.org
Marine plankton support global biological and geochemical processes. Surveys of their
biodiversity have hitherto been geographically restricted and have not accounted for the full …

Microbes on a bottle: substrate, season and geography influence community composition of microbes colonizing marine plastic debris

S Oberbeckmann, AM Osborn, MB Duhaime - PLoS One, 2016 - journals.plos.org
Plastic debris pervades in our oceans and freshwater systems and the potential ecosystem-
level impacts of this anthropogenic litter require urgent evaluation. Microbes readily colonize …

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

L Guillou, D Bachar, S Audic, D Bass… - Nucleic acids …, 2012 - academic.oup.com
The interrogation of genetic markers in environmental meta-barcoding studies is currently
seriously hindered by the lack of taxonomically curated reference data sets for the targeted …

Open science resources for the discovery and analysis of Tara Oceans data

S Pesant, F Not, M Picheral, S Kandels-Lewis… - Scientific data, 2015 - nature.com
Abstract The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the
world oceans, collecting environmental data and plankton, from viruses to metazoans, for …

Marine protist diversity in E uropean coastal waters and sediments as revealed by high‐throughput sequencing

R Massana, A Gobet, S Audic, D Bass… - Environmental …, 2015 - Wiley Online Library
Although protists are critical components of marine ecosystems, they are still poorly
characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist …

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

J Pawlowski, S Audic, S Adl, D Bass, L Belbahri… - PLoS …, 2012 - journals.plos.org
CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and
Fungal Kingdoms | PLOS Biology Skip to main content Advertisement PLOS Biology …

Diversity and temporal patterns of planktonic protist assemblages at a Mediterranean Long Term Ecological Research site

R Piredda, MP Tomasino, AM D'erchia… - FEMS microbiology …, 2017 - academic.oup.com
We tracked temporal changes in protist diversity at the Long Term Ecological Research
(LTER) station MareChiara in the Gulf of Naples (Mediterranean Sea) on eight dates in 2011 …

Eukaryotic microbes, principally fungi and labyrinthulomycetes, dominate biomass on bathypelagic marine snow

AB Bochdansky, MA Clouse, GJ Herndl - The ISME Journal, 2017 - academic.oup.com
In the bathypelagic realm of the ocean, the role of marine snow as a carbon and energy
source for the deep-sea biota and as a potential hotspot of microbial diversity and activity …