Fast parallel algorithms for short-range molecular dynamics

S Plimpton - Journal of computational physics, 1995 - Elsevier
Three parallel algorithms for classical molecular dynamics are presented. The first assigns
each processor a fixed subset of atoms; the second assigns each a fixed subset of inter …

[BOOK][B] ScaLAPACK users' guide

LS Blackford, J Choi, A Cleary, E D'Azevedo, J Demmel… - 1997 - SIAM
Following the initial release of LAPACK and the emerging importance of distributed memory
computing, work began on adapting LAPACK to distributed-memory architectures. Since …

The LINPACK benchmark: past, present and future

JJ Dongarra, P Luszczek… - … and Computation: practice …, 2003 - Wiley Online Library
This paper describes the LINPACK Benchmark and some of its variations commonly used to
assess the performance of computer systems. Aside from the LINPACK Benchmark suite, the …

[BOOK][B] Parallel scientific computation: a structured approach using BSP and MPI

RH Bisseling - 2004 - books.google.com
This is the first text explaining how to use the bulk synchronous parallel (BSP) model and the
freely available BSPlib communication library in parallel algorithm design and parallel …

A new parallel method for molecular dynamics simulation of macromolecular systems

S Plimpton, B Hendrickson - Journal of Computational …, 1996 - Wiley Online Library
Short‐range molecular dynamics simulations of molecular systems are commonly
parallelized by replicated‐data methods, in which each processor stores a copy of all atom …

[PDF][PDF] Scientific computing on bulk synchronous parallel architectures

RH Bisseling, WF McColl - IFIP Congress (1), 1994 - Citeseer
Bulk synchronous parallel architectures offer the prospect of achieving both scalable parallel
performance and architecture independent parallel software. They provide a robust model …

The torus-wrap map** for dense matrix calculations on massively parallel computers

BA Hendrickson, DE Womble - SIAM Journal on Scientific Computing, 1994 - SIAM
Dense linear systems of equations are quite common in science and engineering, arising in
boundary element methods, least squares problems, and other settings. Massively parallel …

Algorithmic redistribution methods for block-cyclic decompositions

AP Petitet, JJ Dongarra - IEEE Transactions on Parallel and …, 1999 - ieeexplore.ieee.org
This article presents various data redistribution methods for block-partitioned linear algebra
algorithms operating on dense matrices that are distributed in a block-cyclic fashion …

Optimizing random network coding for multimedia content distribution over smartphones

H Shin, JS Park - Multimedia Tools and Applications, 2017 - Springer
It is known that random network coding (RNC) technology helps enhance multimedia
content distribution systems in various ways; however, the enhancement can vary widely …

Parallel many-body simulations without all-to-all communication

B Hendrickson, S Plimpton - Journal of Parallel and Distributed Computing, 1995 - Elsevier
Simulations of interacting particles are common in science and engineering, appearing in
such diverse disciplines as astrophysics, fluid dynamics, molecular physics, and materials …