Finding the genomic basis of local adaptation: pitfalls, practical solutions, and future directions

S Hoban, JL Kelley, KE Lotterhos… - The American …, 2016 - journals.uchicago.edu
Uncovering the genetic and evolutionary basis of local adaptation is a major focus of
evolutionary biology. The recent development of cost-effective methods for obtaining high …

A practical guide to environmental association analysis in landscape genomics

C Rellstab, F Gugerli, AJ Eckert, AM Hancock… - Molecular …, 2015 - Wiley Online Library
Landscape genomics is an emerging research field that aims to identify the environmental
factors that shape adaptive genetic variation and the gene variants that drive local …

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

TE Cruickshank, MW Hahn - Molecular ecology, 2014 - Wiley Online Library
The metaphor of 'genomic islands of speciation'was first used to describe heterogeneous
differentiation among loci between the genomes of closely related species. The biological …

Ecological genomics of local adaptation

O Savolainen, M Lascoux, J Merilä - Nature Reviews Genetics, 2013 - nature.com
It is increasingly important to improve our understanding of the genetic basis of local
adaptation because of its relevance to climate change, crop and animal production, and …

Sequencing pools of individuals—mining genome-wide polymorphism data without big funding

C Schlötterer, R Tobler, R Kofler, V Nolte - Nature Reviews Genetics, 2014 - nature.com
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …

Genomics of local adaptation with gene flow

A Tigano, VL Friesen - Molecular ecology, 2016 - Wiley Online Library
Gene flow is a fundamental evolutionary force in adaptation that is especially important to
understand as humans are rapidly changing both the natural environment and natural levels …

[КНИГА][B] Ecological speciation

P Nosil - 2012 - books.google.com
The origin of biological diversity, via the formation of new species, can be inextricably linked
to adaptation to the ecological environment. Specifically, ecological processes are central to …

The genomics of speciation-with-gene-flow

JL Feder, SP Egan, P Nosil - Trends in genetics, 2012 - cell.com
The emerging field of speciation genomics is advancing our understanding of the evolution
of reproductive isolation from the individual gene to a whole-genome perspective. In this …

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

R Kofler, RV Pandey, C Schlötterer - Bioinformatics, 2011 - academic.oup.com
Sequencing pooled DNA samples (Pool-Seq) is the most cost-effective approach for the
genome-wide comparison of population samples. Here, we introduce PoPoolation2, the first …

Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

MC Fischer, C Rellstab, M Leuzinger, M Roumet… - BMC genomics, 2017 - Springer
Background Microsatellite markers are widely used for estimating genetic diversity within
and differentiation among populations. However, it has rarely been tested whether such …