Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
Deep reticulation: the long legacy of hybridization in vascular plant evolution
Hybridization has long been recognized as a fundamental evolutionary process in plants
but, until recently, our understanding of its phylogenetic distribution and biological …
but, until recently, our understanding of its phylogenetic distribution and biological …
One thousand plant transcriptomes and the phylogenomics of green plants
Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
Motivation Phylogenies are important for fundamental biological research, but also have
numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree …
numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree …
Plastid phylogenomic insights into relationships of all flowering plant families
HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …
ecosystems, but phylogenetic relationships at the familial level and above remain only …
Origin of angiosperms and the puzzle of the Jurassic gap
Angiosperms are by far the most species-rich clade of land plants, but their origin and early
evolutionary history remain poorly understood. We reconstructed angiosperm phylogeny …
evolutionary history remain poorly understood. We reconstructed angiosperm phylogeny …
Genomes of subaerial Zygnematophyceae provide insights into land plant evolution
The transition to a terrestrial environment, termed terrestrialization, is generally regarded as
a pivotal event in the evolution and diversification of the land plant flora that changed the …
a pivotal event in the evolution and diversification of the land plant flora that changed the …
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
The Plant DNA C-values database (release 7.1)
In recent decades, interest in plant genome size (ie the total amount of DNA in the
unreplicated haploid nucleus; Greilhuber et al., 2005) has been growing exponentially as …
unreplicated haploid nucleus; Greilhuber et al., 2005) has been growing exponentially as …
A comprehensive phylogenomic platform for exploring the angiosperm tree of life
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …