The SMC5/6 complex: folding chromosomes back into shape when genomes take a break

S Roy, H Adhikary, D D'Amours - Nucleic acids research, 2024 - academic.oup.com
High-level folding of chromatin is a key determinant of the shape and functional state of
chromosomes. During cell division, structural maintenance of chromosome (SMC) …

Super-enhancers and their parts: from prediction efforts to pathognomonic status

AV Vasileva, MG Gladkova, GA Ashniev… - International Journal of …, 2024 - mdpi.com
IJMS | Free Full-Text | Super-Enhancers and Their Parts: From Prediction Efforts to
Pathognomonic Status Next Article in Journal Constitutional BRCA1 and MGMT Methylation Are …

[PDF][PDF] Large-scale phenogenomic analysis of human cancers uncovers frequent alterations affecting SMC5/6 complex components in breast cancer

S Roy, A Zaker, A Mer, D D'Amours - NAR cancer, 2023 - academic.oup.com
Cancer cells often experience large-scale alterations in genome architecture because of
DNA damage and replication stress. Whether mutations in core regulators of chromosome …

Cancer fusion transcripts with human non-coding RNAs

T Mohammad, MA Zolotovskaia… - Frontiers in …, 2024 - pmc.ncbi.nlm.nih.gov
Cancer chimeric, or fusion, transcripts are thought to most frequently appear due to
chromosomal aberrations that combine moieties of unrelated normal genes. When being …

The Smc5/6 complex counteracts R-loop formation at highly transcribed genes in cooperation with RNase H2

S Roy, H Adhikary, S Isler, D D'Amours - eLife, 2024 - elifesciences.org
The R-loop is a common transcriptional by-product that consists of an RNA-DNA duplex
joined to a displaced strand of genomic DNA. While the effects of R-loops on health and …

[HTML][HTML] Loop Extrusion Machinery Impairments in Models and Disease

A Ryzhkova, E Maltseva, N Battulin, E Kabirova - Cells, 2024 - mdpi.com
Structural maintenance of chromosomes (SMC) complexes play a crucial role in organizing
the three-dimensional structure of chromatin, facilitating key processes such as gene …

Enhancer clusters drive type I interferon-induced TRAIL overexpression in cancer, and its intracellular protein accumulation fails to induce apoptosis

C Di Benedetto, T Khan, S Serrano-Saenz… - Cancers, 2023 - mdpi.com
Simple Summary Upon interferon stimulation, cancer cells upregulate the pro-apoptotic
cytokine TRAIL, but the mechanism of this upregulation remains unresolved. By examining …

Super-Enhancers: Gatekeepers of Breast Cancer Growth and Resistance

J Du, Z Zhang, W Tao - Available at SSRN 5150923, 2024 - papers.ssrn.com
The mechanisms underlying breast cancer development are diverse and complex. While the
roles of conventional oncogenes and signaling pathways have been increasingly …

InGene: Finding influential genes from embeddings of nonlinear dimension reduction techniques

C Goswami, N Bhattacharya, D Sengupta - bioRxiv, 2023 - biorxiv.org
We introduce InGene, the first of its kind, fast and scalable non-linear, unsupervised method
for analyzing single-cell RNA sequencing data (scRNA-seq). While non-linear …