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Microbiological and molecular insights on rare Actinobacteria harboring bioactive prospective
Background Actinobacteria is as a group of advanced filamentous bacteria. Rare
Actinobacteria are of special interest as they are rarely isolated from the environments. They …
Actinobacteria are of special interest as they are rarely isolated from the environments. They …
Beginner's guide to comparative bacterial genome analysis using next-generation sequence data
High throughput sequencing is now fast and cheap enough to be considered part of the
toolbox for investigating bacteria, and there are thousands of bacterial genome sequences …
toolbox for investigating bacteria, and there are thousands of bacterial genome sequences …
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
Microbial pathogenesis studies are typically performed with reference strains, thereby
overlooking within-species heterogeneity in microbial virulence. Here we integrated human …
overlooking within-species heterogeneity in microbial virulence. Here we integrated human …
Measurement of bacterial replication rates in microbial communities
Culture-independent microbiome studies have increased our understanding of the
complexity and metabolic potential of microbial communities. However, to understand the …
complexity and metabolic potential of microbial communities. However, to understand the …
Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing
The Gram-negative bacteria Klebsiella pneumoniae is a major cause of nosocomial
infections, primarily among immunocompromised patients. The emergence of strains …
infections, primarily among immunocompromised patients. The emergence of strains …
ALLMAPS: robust scaffold ordering based on multiple maps
The ordering and orientation of genomic scaffolds to reconstruct chromosomes is an
essential step during de novo genome assembly. Because this process utilizes various …
essential step during de novo genome assembly. Because this process utilizes various …
IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
Abstract IslandViewer (http://pathogenomics. sfu. ca/islandviewer) is a widely used web-
based resource for the prediction and analysis of genomic islands (GIs) in bacterial and …
based resource for the prediction and analysis of genomic islands (GIs) in bacterial and …
Lactate-and acetate-based cross-feeding interactions between selected strains of lactobacilli, bifidobacteria and colon bacteria in the presence of inulin-type fructans
Cross-feeding interactions were studied between selected strains of lactobacilli and/or
bifidobacteria and butyrate-producing colon bacteria that consume lactate but are not able to …
bifidobacteria and butyrate-producing colon bacteria that consume lactate but are not able to …
Bacterial virulence phenotypes of Escherichia coli and host susceptibility determine risk for urinary tract infections
Urinary tract infections (UTIs) are caused by uropathogenic Escherichia coli (UPEC) strains.
In contrast to many enteric E. coli pathogroups, no genetic signature has been identified for …
In contrast to many enteric E. coli pathogroups, no genetic signature has been identified for …
Stable high-density and maternally inherited Wolbachia infections in Anopheles moucheti and Anopheles demeilloni mosquitoes
Wolbachia, a widespread bacterium that can reduce pathogen transmission in mosquitoes,
has recently been reported to be present in Anopheles (An.) species. In wild populations of …
has recently been reported to be present in Anopheles (An.) species. In wild populations of …