Organoids

Z Zhao, X Chen, AM Dowbaj, A Sljukic… - Nature Reviews …, 2022 - nature.com
Organoids are simple tissue-engineered cell-based in vitro models that recapitulate many
aspects of the complex structure and function of the corresponding in vivo tissue. They can …

mRNAs, proteins and the emerging principles of gene expression control

C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
Gene expression involves transcription, translation and the turnover of mRNAs and proteins.
The degree to which protein abundances scale with mRNA levels and the implications in …

Cell fate specification and differentiation in the adult mammalian intestine

J Beumer, H Clevers - Nature reviews Molecular cell biology, 2021 - nature.com
Intestinal stem cells at the bottom of crypts fuel the rapid renewal of the different cell types
that constitute a multitasking tissue. The intestinal epithelium facilitates selective uptake of …

Pig genome functional annotation enhances the biological interpretation of complex traits and human disease

Z Pan, Y Yao, H Yin, Z Cai, Y Wang, L Bai… - Nature …, 2021 - nature.com
The functional annotation of livestock genomes is crucial for understanding the molecular
mechanisms that underpin complex traits of economic importance, adaptive evolution and …

Organoid cell fate dynamics in space and time

X Zheng, MA Betjes, P Ender, YJ Goos… - Science …, 2023 - science.org
Organoids are a major new tool to study tissue renewal. However, characterizing the
underlying differentiation dynamics remains challenging. Here, we developed TypeTracker …

Multi-omics approaches to define calcific aortic valve disease pathogenesis

MC Blaser, S Kraler, TF Lüscher, E Aikawa - Circulation research, 2021 - Am Heart Assoc
Calcific aortic valve disease sits at the confluence of multiple world-wide epidemics of aging,
obesity, diabetes, and renal dysfunction, and its prevalence is expected to nearly triple over …

HNF4 regulates fatty acid oxidation and is required for renewal of intestinal stem cells in mice

L Chen, RP Vasoya, NH Toke, A Parthasarathy, S Luo… - Gastroenterology, 2020 - Elsevier
Background & Aims Functions of intestinal stem cells (ISCs) are regulated by diet and
metabolic pathways. Hepatocyte nuclear factor 4 (HNF4) family are transcription factors that …

Organoid based personalized medicine: from bench to bedside

Y Li, P Tang, S Cai, J Peng, G Hua - Cell Regeneration, 2020 - Springer
Three-dimensional cultured organoids have become a powerful in vitro research tool that
preserves genetic, phenotypic and behavioral trait of in vivo organs, which can be …

Probing the tumor suppressor function of BAP1 in CRISPR-engineered human liver organoids

B Artegiani, L van Voorthuijsen, RGH Lindeboom… - Cell Stem Cell, 2019 - cell.com
The deubiquitinating enzyme BAP1 is a tumor suppressor, among others involved in
cholangiocarcinoma. BAP1 has many proposed molecular targets, while its Drosophila …

A look into retinal organoids: methods, analytical techniques, and applications

TAV Afanasyeva, JC Corral-Serrano, A Garanto… - Cellular and Molecular …, 2021 - Springer
Inherited retinal diseases (IRDs) cause progressive loss of light-sensitive photoreceptors in
the eye and can lead to blindness. Gene-based therapies for IRDs have shown remarkable …