Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2

X Li, J Zai, Q Zhao, Q Nie, Y Li, BT Foley… - Journal of medical …, 2020 - Wiley Online Library
To investigate the evolutionary history of the recent outbreak of severe acute respiratory
syndrome coronavirus 2 (SARS‐CoV‐2) in China, a total of 70 genomes of virus strains from …

Transmission dynamics and evolutionary history of 2019‐nCoV

X Li, W Wang, X Zhao, J Zai, Q Zhao… - Journal of medical …, 2020 - Wiley Online Library
To investigate the time origin, genetic diversity, and transmission dynamics of the recent
2019‐nCoV outbreak in China and beyond, a total of 32 genomes of virus strains sampled …

Potential of large “first generation” human‐to‐human transmission of 2019‐nCoV

X Li, J Zai, X Wang, Y Li - Journal of medical virology, 2020 - Wiley Online Library
To investigate the genetic diversity, time origin, and evolutionary history of the 2019‐nCoV
outbreak in China and Thailand, a total of 12 genome sequences of the virus with known …

Phylogenetic and phylodynamic analyses of SARS-CoV-2

Q Nie, X Li, W Chen, D Liu, Y Chen, H Li, D Li, M Tian… - Virus research, 2020 - Elsevier
To investigate the evolutionary and epidemiological dynamics of the current COVID-19
outbreak, a total of 112 genomes of SARS-CoV-2 strains sampled from China and 12 other …

Evolution of oxygenic photosynthesis: genome-wide analysis of the OEC extrinsic proteins

J De Las Rivas, M Balsera, J Barber - Trends in plant science, 2004 - cell.com
The appearance of oxygenic photosynthesis was a key event in the evolution of our green
biosphere. Oxygen in the atmosphere is generally believed to come from the biomolecular …

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

J Purushe, DE Fouts, M Morrison, BA White, RI Mackie… - Microbial ecology, 2010 - Springer
The Prevotellas comprise a diverse group of bacteria that has received surprisingly limited
attention at the whole genome-sequencing level. In this communication, we present the …

Phylogenetic network construction approaches

V Makarenkov, D Kevorkov, P Legendre - Applied mycology and …, 2006 - Elsevier
This chapter presents a review of the mathematical techniques available to construct
phytogenies and to represent reticulate evolution. Phytogenies can be estimated using …

[HTML][HTML] Multiple Wnts are involved in Hydra organizer formation and regeneration

T Lengfeld, H Watanabe, O Simakov, D Lindgens… - Developmental …, 2009 - Elsevier
Wnt genes and β-Catenin signaling are involved in axial patterning processes in vertebrate
embryogenesis in setting up the Spemann–Mangold organizer in amphibian embryos. An …

Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi

S Capella-Gutiérrez, M Marcet-Houben, T Gabaldon - BMC biology, 2012 - Springer
Background Microsporidia is one of the taxa that have experienced the most dramatic
taxonomic reclassifications. Once thought to be among the earliest diverging eukaryotes, the …

[HTML][HTML] Expression of secreted Wnt pathway components reveals unexpected complexity of the planarian amputation response

KA Gurley, SA Elliott, O Simakov, HA Schmidt… - Developmental …, 2010 - Elsevier
Regeneration is widespread throughout the animal kingdom, but our molecular
understanding of this process in adult animals remains poorly understood. Wnt/β-catenin …