Interactions between bacterial and phage communities in natural environments

A Chevallereau, BJ Pons, S van Houte… - Nature Reviews …, 2022 - nature.com
We commonly acknowledge that bacterial viruses (phages) shape the composition and
evolution of bacterial communities in nature and therefore have important roles in ecosystem …

Phage diversity, genomics and phylogeny

MB Dion, F Oechslin, S Moineau - Nature Reviews Microbiology, 2020 - nature.com
Recent advances in viral metagenomics have enabled the rapid discovery of an
unprecedented catalogue of phages in numerous environments, from the human gut to the …

The biomass distribution on Earth

YM Bar-On, R Phillips, R Milo - Proceedings of the National …, 2018 - National Acad Sciences
A census of the biomass on Earth is key for understanding the structure and dynamics of the
biosphere. However, a global, quantitative view of how the biomass of different taxa …

Bacteriophages of the human gut: the “known unknown” of the microbiome

AN Shkoporov, C Hill - Cell host & microbe, 2019 - cell.com
The human gut microbiome is a dense and taxonomically diverse consortium of
microorganisms. While the bacterial components of the microbiome have received …

Phage puppet masters of the marine microbial realm

M Breitbart, C Bonnain, K Malki, NA Sawaya - Nature microbiology, 2018 - nature.com
Viruses numerically dominate our oceans; however, we have only just begun to document
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …

Virus taxonomy in the age of metagenomics

P Simmonds, MJ Adams, M Benkő, M Breitbart… - Nature Reviews …, 2017 - nature.com
The number and diversity of viral sequences that are identified in metagenomic data far
exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of …

Mutualistic interplay between bacteriophages and bacteria in the human gut

AN Shkoporov, CJ Turkington, C Hill - Nature Reviews Microbiology, 2022 - nature.com
Bacteriophages (phages) are often described as obligate predators of their bacterial hosts,
and phage predation is one of the leading forces controlling the density and distribution of …

Are There 1031 Virus Particles on Earth, or More, or Fewer?

AR Mushegian - Journal of bacteriology, 2020 - Am Soc Microbiol
The number of virus particles on Earth is frequently reported in the scientific literature and in
general-interest publications as being on the order of 1031, with some confusion about …

Microbial defenses against mobile genetic elements and viruses: Who defends whom from what?

EPC Rocha, D Bikard - PLoS biology, 2022 - journals.plos.org
Prokaryotes have numerous mobile genetic elements (MGEs) that mediate horizontal gene
transfer (HGT) between cells. These elements can be costly, even deadly, and cells use …

Lysogeny in nature: mechanisms, impact and ecology of temperate phages

C Howard-Varona, KR Hargreaves, ST Abedon… - The ISME …, 2017 - academic.oup.com
Viruses that infect bacteria (phages) can influence bacterial community dynamics, bacterial
genome evolution and ecosystem biogeochemistry. These influences differ depending on …