A guide to state–space modeling of ecological time series

M Auger‐Méthé, K Newman, D Cole… - Ecological …, 2021 - Wiley Online Library
State–space models (SSMs) are an important modeling framework for analyzing ecological
time series. These hierarchical models are commonly used to model population dynamics …

Understanding ecological civilization in China: From political context to science

B Xue, B Han, H Li, X Gou, H Yang, H Thomas… - Ambio, 2023 - Springer
China's concept of “ecological civilization” can be understood as a new system of
development and governance based on the perspective of political decision-making …

Fuzzy evaluation of the ecological security of land resources in mainland China based on the Pressure-State-Response framework

H Cheng, L Zhu, J Meng - Science of the Total Environment, 2022 - Elsevier
The extensive exploitation and use of land resources has caused a variety of land
degradation problems including soil erosion, desertification and salinization in China, which …

sdmTMB: an R package for fast, flexible, and user-friendly generalized linear mixed effects models with spatial and spatiotemporal random fields

SC Anderson, EJ Ward, PA English, LAK Barnett - BioRxiv, 2022 - biorxiv.org
Geostatistical data—spatially referenced observations related to some continuous spatial
phenomenon—are ubiquitous in ecology and can reveal ecological processes and inform …

aniMotum, an R package for animal movement data: Rapid quality control, behavioural estimation and simulation

ID Jonsen, WJ Grecian, L Phillips… - Methods in Ecology …, 2023 - Wiley Online Library
Animal tracking data are indispensable for understanding the ecology, behaviour and
physiology of mobile or cryptic species. Meaningful signals in these data can be obscured …

Catch per unit effort modelling for stock assessment: A summary of good practices

SD Hoyle, RA Campbell, ND Ducharme-Barth… - Fisheries …, 2024 - Elsevier
Indices of abundance based on fishery catch-per-unit-effort (CPUE) are important
components of many stock assessments, particularly when fishery-independent surveys are …

Decadal migration phenology of a long-lived Arctic icon keeps pace with climate change

CR Shuert, M Marcoux, NE Hussey… - Proceedings of the …, 2022 - National Acad Sciences
Animals migrate in response to seasonal environments, to reproduce, to benefit from
resource pulses, or to avoid fluctuating hazards. Although climate change is predicted to …

Bridging the gap between commercial fisheries and survey data to model the spatiotemporal dynamics of marine species

MC Rufener, K Kristensen, JR Nielsen… - Ecological …, 2021 - Wiley Online Library
Monitoring and assessment of natural resources often require inputs from multiple data
sources. In fisheries science, for example, the inference of a species' abundance distribution …

Movement responses to environment: fast inference of variation among southern elephant seals with a mixed effects model

ID Jonsen, CR McMahon, TA Patterson… - 2019 - Wiley Online Library
Like many species, movement patterns of southern elephant seals (Mirounga leonina) are
being influenced by long‐term environmental change. These seals migrate up to 4,000 km …

Essential features of the next-generation integrated fisheries stock assessment package: a perspective

AE Punt, A Dunn, BÞ Elvarsson, J Hampton, SD Hoyle… - Fisheries …, 2020 - Elsevier
Integrated analysis (or integrated population modelling) methods have become the
preferred approach for conducting stock assessments, and providing the basis for …