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Plant organellar genomes: much done, much more to do
Plastids and mitochondria are the only organelles that possess genomes of endosymbiotic
origin. In recent decades, advances in sequencing technologies have contributed to a …
origin. In recent decades, advances in sequencing technologies have contributed to a …
Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb)
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …
CPGView: A package for visualizing detailed chloroplast genome structures
S Liu, Y Ni, J Li, X Zhang, H Yang… - Molecular Ecology …, 2023 - Wiley Online Library
Chloroplast genomes have been widely used in studying plant phylogeny and evolution.
Several chloroplast genome visualization tools have been developed to display the …
Several chloroplast genome visualization tools have been developed to display the …
Plastid phylogenomic insights into relationships of all flowering plant families
HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
Background Flowering plants (angiosperms) are dominant components of global terrestrial
ecosystems, but phylogenetic relationships at the familial level and above remain only …
ecosystems, but phylogenetic relationships at the familial level and above remain only …
Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding
To decipher the genetic diversity within the cucurbit genus Citrullus, we generated telomere-
to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus …
to-telomere (T2T) assemblies of 27 distinct genotypes, encompassing all seven Citrullus …
A comprehensive phylogenomic platform for exploring the angiosperm tree of life
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
PMAT: an efficient plant mitogenome assembly toolkit using low-coverage HiFi sequencing data
Complete mitochondrial genomes (mitogenomes) of plants are valuable resources for
nucleocytoplasmic interactions, plant evolution, and plant cytoplasmic male sterile line …
nucleocytoplasmic interactions, plant evolution, and plant cytoplasmic male sterile line …
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …
An updated tribal classification of Lamiaceae based on plastome phylogenomics
Background A robust molecular phylogeny is fundamental for develo** a stable
classification and providing a solid framework to understand patterns of diversification …
classification and providing a solid framework to understand patterns of diversification …