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Multi-omic and multi-view clustering algorithms: review and cancer benchmark
N Rappoport, R Shamir - Nucleic acids research, 2018 - academic.oup.com
Recent high throughput experimental methods have been used to collect large biomedical
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …
omics datasets. Clustering of single omic datasets has proven invaluable for biological and …
Correlation and association analyses in microbiome study integrating multiomics in health and disease
Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …
research fields, including microbiome and integrative multiomics studies. Correlation and …
[CARTE][B] Habitat suitability and distribution models: with applications in R
This book introduces the key stages of niche-based habitat suitability model building,
evaluation and prediction required for understanding and predicting future patterns of …
evaluation and prediction required for understanding and predicting future patterns of …
Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation
D Pont, M Rocle, A Valentini, R Civade, P Jean… - Scientific reports, 2018 - nature.com
Despite the ecological and societal importance of large rivers, fish sampling remains costly
and limited to specific habitats (eg, river banks). Using an eDNA metabarcoding approach …
and limited to specific habitats (eg, river banks). Using an eDNA metabarcoding approach …
[HTML][HTML] Identification of an intestinal microbiota signature associated with severity of irritable bowel syndrome
Background & Aims We have limited knowledge about the association between the
composition of the intestinal microbiota and clinical features of irritable bowel syndrome …
composition of the intestinal microbiota and clinical features of irritable bowel syndrome …
A global method for calculating plant CSR ecological strategies applied across biomes world‐wide
Summary Competitor, stress‐tolerator, ruderal (CSR) theory is a prominent plant functional
strategy scheme previously applied to local floras. Globally, the wide geographic and …
strategy scheme previously applied to local floras. Globally, the wide geographic and …
Unsupervised multi-omics data integration methods: a comprehensive review
Through the developments of Omics technologies and dissemination of large-scale
datasets, such as those from The Cancer Genome Atlas, Alzheimer's Disease Neuroimaging …
datasets, such as those from The Cancer Genome Atlas, Alzheimer's Disease Neuroimaging …
Application of multivariate statistical techniques in microbial ecology
O Paliy, V Shankar - Molecular ecology, 2016 - Wiley Online Library
Recent advances in high‐throughput methods of molecular analyses have led to an
explosion of studies generating large‐scale ecological data sets. In particular, noticeable …
explosion of studies generating large‐scale ecological data sets. In particular, noticeable …
Dimension reduction techniques for the integrative analysis of multi-omics data
State-of-the-art next-generation sequencing, transcriptomics, proteomics and other high-
throughput 'omics' technologies enable the efficient generation of large experimental data …
throughput 'omics' technologies enable the efficient generation of large experimental data …
[CARTE][B] Numerical ecology with R
Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical
Ecology and the implementation of this discipline in the R language. After short theoretical …
Ecology and the implementation of this discipline in the R language. After short theoretical …