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Perspectives and benefits of high-throughput long-read sequencing in microbial ecology
Short-read, high-throughput sequencing (HTS) methods have yielded numerous important
insights into microbial ecology and function. Yet, in many instances short-read HTS …
insights into microbial ecology and function. Yet, in many instances short-read HTS …
Diversity and ecology of protists revealed by metabarcoding
Protists are the dominant eukaryotes in the biosphere where they play key functional roles.
While protists have been studied for over a century, it is the high-throughput sequencing of …
While protists have been studied for over a century, it is the high-throughput sequencing of …
Revisions to the classification, nomenclature, and diversity of eukaryotes
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk.
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …
Microbiol. 59 (5)] and retains an emphasis on protists. Changes since have improved the …
Warming reshaped the microbial hierarchical interactions
Y Zhou, B Sun, B ** of
microbial diversity and modified microbial interactions. Here, we examined the effects of 5 …
microbial diversity and modified microbial interactions. Here, we examined the effects of 5 …
An introduction to next generation sequencing bioinformatic analysis in gut microbiome studies
The gut microbiome is a microbial ecosystem which expresses 100 times more genes than
the human host and plays an essential role in human health and disease pathogenesis …
the human host and plays an essential role in human health and disease pathogenesis …
Functional trait‐based approaches as a common framework for aquatic ecologists
Aquatic ecologists face challenges in identifying the general rules of the functioning of
ecosystems. A common framework, including freshwater, marine, benthic, and pelagic …
ecosystems. A common framework, including freshwater, marine, benthic, and pelagic …
Diat. barcode, an open-access curated barcode library for diatoms
Diatoms (Bacillariophyta) are ubiquitous microalgae which produce a siliceous exoskeleton
and which make a major contribution to the productivity of oceans and freshwaters. They …
and which make a major contribution to the productivity of oceans and freshwaters. They …
Perspectives from ten years of protist studies by high‐throughput metabarcoding
During the last decade, high‐throughput metabarcoding became routine for analyzing
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
protistan diversity and distributions in nature. Amid a multitude of exciting findings, scientists …
Does intraspecific variation in rDNA copy number affect analysis of microbial communities?
Amplicon sequencing of partial regions of the ribosomal RNA loci (rDNA) is widely used to
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …
Cyanoseq: A database of cyanobacterial 16S rRNA gene sequences with curated taxonomy
Cyanobacteria are photosynthetic bacteria that occupy various habitats across the globe,
playing critical roles in many of Earth's biogeochemical cycles both in both aquatic and …
playing critical roles in many of Earth's biogeochemical cycles both in both aquatic and …