A mini review of node centrality metrics in biological networks
The diversity of nodes in a complex network causes each node to have varying significance,
and the important nodes often have a significant impact on the structure and function of the …
and the important nodes often have a significant impact on the structure and function of the …
Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …
methods and in rational drug design, the increase in approved drugs in the past decade did …
A combinatorial approach to graphlet counting
T Hočevar, J Demšar - Bioinformatics, 2014 - academic.oup.com
Motivation: Small-induced subgraphs called graphlets are emerging as a possible tool for
exploration of global and local structure of networks and for analysis of roles of individual …
exploration of global and local structure of networks and for analysis of roles of individual …
Control of complex networks requires both structure and dynamics
The study of network structure has uncovered signatures of the organization of complex
systems. However, there is also a need to understand how to control them; for example …
systems. However, there is also a need to understand how to control them; for example …
Exploring the structure and function of temporal networks with dynamic graphlets
Motivation: With increasing availability of temporal real-world networks, how to efficiently
study these data? One can model a temporal network as a single aggregate static network …
study these data? One can model a temporal network as a single aggregate static network …
Minimum dominating set-based methods for analyzing biological networks
JC Nacher, T Akutsu - Methods, 2016 - Elsevier
The fast increase of 'multi-omics' data does not only pose a computational challenge for its
analysis but also requires novel algorithmic methodologies to identify complex biological …
analysis but also requires novel algorithmic methodologies to identify complex biological …
Predicting disease associations via biological network analysis
Background Understanding the relationship between diseases based on the underlying
biological mechanisms is one of the greatest challenges in modern biology and medicine …
biological mechanisms is one of the greatest challenges in modern biology and medicine …
Simultaneous optimization of both node and edge conservation in network alignment via WAVE
Network alignment can be used to transfer functional knowledge between conserved
regions of different networks. Existing methods use a node cost function (NCF) to compare …
regions of different networks. Existing methods use a node cost function (NCF) to compare …
Dynamic networks reveal key players in aging
Motivation: Because susceptibility to diseases increases with age, studying aging gains
importance. Analyses of gene expression or sequence data, which have been …
importance. Analyses of gene expression or sequence data, which have been …
Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma
Background Epigenetics refers to the reversible functional modifications of the genome that
do not correlate to changes in the DNA sequence. The aim of this study is to understand …
do not correlate to changes in the DNA sequence. The aim of this study is to understand …