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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb)
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …
Insect mitochondrial genomics: A decade of progress
SL Cameron - Annual Review of Entomology, 2024 - annualreviews.org
The past decade has seen the availability of insect genomic data explode, with
mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of …
mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of …
Evolving perspectives in Hymenoptera systematics: Bridging fossils and genomes across time
YM Zhang, S Bossert, T Spasojevic - Systematic Entomology, 2025 - Wiley Online Library
The recent advances in sequencing technologies, phylogenomics and divergence dating
methods call for an integrative review of the current state of Hymenoptera systematics. We …
methods call for an integrative review of the current state of Hymenoptera systematics. We …
Mito-nuclear discordance within Anthozoa, with notes on unique properties of their mitochondrial genomes
AM Quattrini, KE Snyder, R Purow-Ruderman… - Scientific Reports, 2023 - nature.com
Whole mitochondrial genomes are often used in phylogenetic reconstruction. However,
discordant patterns in species relationships between mitochondrial and nuclear phylogenies …
discordant patterns in species relationships between mitochondrial and nuclear phylogenies …
Island songbirds as windows into evolution in small populations
Due to their limited ranges and inherent isolation, island species have long been recognized
as crucial systems for tackling a range of evolutionary questions, including in the early study …
as crucial systems for tackling a range of evolutionary questions, including in the early study …
Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils
Weevils are an unusually species-rich group of phytophagous insects for which there is
increasing evidence of frequent involvement in brood-site pollination. This study examines …
increasing evidence of frequent involvement in brood-site pollination. This study examines …
A remarkable new deep-sea nereidid (Annelida: Nereididae) with gills
Nereidid polychaetes are well known from shallow marine habitats, but their diversity in the
deep sea is poorly known. Here we describe an unusual new nereidid species found at …
deep sea is poorly known. Here we describe an unusual new nereidid species found at …
Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery
Transposable elements (TE) play critical roles in sha** genome evolution. Highly
repetitive TE sequences are also a major source of assembly gaps making it difficult to fully …
repetitive TE sequences are also a major source of assembly gaps making it difficult to fully …
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis
The root systems of most plant species are aided by the soil-foraging capacities of symbiotic
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …
Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction
Complex patterns of genome evolution associated with the end-Cretaceous [Cretaceous-
Paleogene (K–Pg)] mass extinction limit our understanding of the early evolutionary history …
Paleogene (K–Pg)] mass extinction limit our understanding of the early evolutionary history …