MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

M Uliano-Silva, JGRN Ferreira, K Krasheninnikova… - BMC …, 2023 - Springer
Abstract Background PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb)
and highly accurate (> Q20). Because of these properties, they have revolutionised genome …

Insect mitochondrial genomics: A decade of progress

SL Cameron - Annual Review of Entomology, 2024 - annualreviews.org
The past decade has seen the availability of insect genomic data explode, with
mitochondrial (mt) genome data seeing the greatest growth. The widespread adoption of …

Evolving perspectives in Hymenoptera systematics: Bridging fossils and genomes across time

YM Zhang, S Bossert, T Spasojevic - Systematic Entomology, 2025 - Wiley Online Library
The recent advances in sequencing technologies, phylogenomics and divergence dating
methods call for an integrative review of the current state of Hymenoptera systematics. We …

Mito-nuclear discordance within Anthozoa, with notes on unique properties of their mitochondrial genomes

AM Quattrini, KE Snyder, R Purow-Ruderman… - Scientific Reports, 2023 - nature.com
Whole mitochondrial genomes are often used in phylogenetic reconstruction. However,
discordant patterns in species relationships between mitochondrial and nuclear phylogenies …

Island songbirds as windows into evolution in small populations

T Leroy, M Rousselle, MK Tilak, AE Caizergues… - Current Biology, 2021 - cell.com
Due to their limited ranges and inherent isolation, island species have long been recognized
as crucial systems for tackling a range of evolutionary questions, including in the early study …

Phylogenomics illuminates the phylogeny of flower weevils (Curculioninae) and reveals ten independent origins of brood-site pollination mutualism in true weevils

J Haran, X Li, R Allio, S Shin… - … of the Royal …, 2023 - royalsocietypublishing.org
Weevils are an unusually species-rich group of phytophagous insects for which there is
increasing evidence of frequent involvement in brood-site pollination. This study examines …

A remarkable new deep-sea nereidid (Annelida: Nereididae) with gills

TF Villalobos-Guerrero, S Huč, E Tilic, AS Hiley… - Plos one, 2024 - journals.plos.org
Nereidid polychaetes are well known from shallow marine habitats, but their diversity in the
deep sea is poorly known. Here we describe an unusual new nereidid species found at …

Remarkably high repeat content in the genomes of sparrows: the importance of genome assembly completeness for transposable element discovery

PM Benham, C Cicero, M Escalona… - Genome Biology and …, 2024 - academic.oup.com
Transposable elements (TE) play critical roles in sha** genome evolution. Highly
repetitive TE sequences are also a major source of assembly gaps making it difficult to fully …

A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis

BF Manley, JS Lotharukpong… - G3: Genes …, 2023 - academic.oup.com
The root systems of most plant species are aided by the soil-foraging capacities of symbiotic
arbuscular mycorrhizal (AM) fungi of the Glomeromycotina subphylum. Despite recent …

Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction

JS Berv, S Singhal, DJ Field, N Walker-Hale… - Science …, 2024 - science.org
Complex patterns of genome evolution associated with the end-Cretaceous [Cretaceous-
Paleogene (K–Pg)] mass extinction limit our understanding of the early evolutionary history …