Mechanics and functional consequences of nuclear deformations

Y Kalukula, AD Stephens, J Lammerding… - … reviews Molecular cell …, 2022 - nature.com
As the home of cellular genetic information, the nucleus has a critical role in determining cell
fate and function in response to various signals and stimuli. In addition to biochemical …

Understanding 3D genome organization by multidisciplinary methods

I Jerkovic, G Cavalli - Nature reviews Molecular cell biology, 2021 - nature.com
Understanding how chromatin is folded in the nucleus is fundamental to understanding its
function. Although 3D genome organization has been historically difficult to study owing to a …

Condensed but liquid-like domain organization of active chromatin regions in living human cells

T Nozaki, S Shinkai, S Ide, K Higashi, S Tamura… - Science …, 2023 - science.org
In eukaryotes, higher-order chromatin organization is spatiotemporally regulated as
domains, for various cellular functions. However, their physical nature in living cells remains …

CTCF shapes chromatin structure and gene expression in health and disease

B Dehingia, M Milewska, M Janowski, A Pękowska - EMBO reports, 2022 - embopress.org
CCCTC‐binding factor (CTCF) is an eleven zinc finger (ZF), multivalent transcriptional
regulator, that recognizes numerous motifs thanks to the deployment of distinct combinations …

Super-resolution microscopy: a brief history and new avenues

K Prakash, B Diederich… - … Transactions of the …, 2022 - royalsocietypublishing.org
Super-resolution microscopy (SRM) is a fast-develo** field that encompasses
fluorescence imaging techniques with the capability to resolve objects below the classical …

New insights into genome folding by loop extrusion from inducible degron technologies

E de Wit, EP Nora - Nature Reviews Genetics, 2023 - nature.com
Chromatin folds into dynamic loops that often span hundreds of kilobases and physically
wire distant loci together for gene regulation. These loops are continuously created …

Liquid–liquid phase separation in chromatin

K Rippe - Cold Spring Harbor perspectives in biology, 2022 - cshperspectives.cshlp.org
In eukaryotic cells, protein and RNA factors involved in genome activities like transcription,
RNA processing, DNA replication, and repair accumulate in self-organizing membraneless …

Is euchromatin really open in the cell?

K Maeshima, S Iida, MA Shimazoe, S Tamura… - Trends in Cell Biology, 2024 - cell.com
Genomic DNA is wrapped around a core histone octamer and forms a nucleosome. In
higher eukaryotic cells, strings of nucleosomes are irregularly folded as chromatin domains …

Chromatin organization drives the search mechanism of nuclear factors

M Mazzocca, A Loffreda, E Colombo, T Fillot… - Nature …, 2023 - nature.com
Nuclear factors rapidly scan the genome for their targets, but the role of nuclear organization
in such search is uncharted. Here we analyzed how multiple factors explore chromatin …

An open-access volume electron microscopy atlas of whole cells and tissues

CS Xu, S Pang, G Shtengel, A Müller, AT Ritter… - Nature, 2021 - nature.com
Understanding cellular architecture is essential for understanding biology. Electron
microscopy (EM) uniquely visualizes cellular structures with nanometre resolution. However …