[PDF][PDF] Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM
Recent advances in instrumentation and software have resulted in cryo-EM rapidly
becoming the method of choice for structural biologists, especially for those studying the …
becoming the method of choice for structural biologists, especially for those studying the …
[PDF][PDF] Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions
The recent rapid development of single-particle electron cryo-microscopy (cryo-EM) now
allows structures to be solved by this method at resolutions close to 3 Å. Here, a number of …
allows structures to be solved by this method at resolutions close to 3 Å. Here, a number of …
[PDF][PDF] Conformation-independent structural comparison of macromolecules with ProSMART
The identification and exploration of (dis) similarities between macromolecular structures
can help to gain biological insight, for instance when visualizing or quantifying the response …
can help to gain biological insight, for instance when visualizing or quantifying the response …
Crystallographic phasing from weak anomalous signals
Q Liu, WA Hendrickson - Current opinion in structural biology, 2015 - Elsevier
Highlights•Crystal handling to reduce damage, variations and background.•Beamline
instrumentation and data collection strategies for weak anomalous signals.•High multiplicity …
instrumentation and data collection strategies for weak anomalous signals.•High multiplicity …
[PDF][PDF] Modelling covalent linkages in CCP4
In this contribution, the current protocols for modelling covalent linkages within the CCP4
suite are considered. The mechanism used for modelling covalent linkages is reviewed: the …
suite are considered. The mechanism used for modelling covalent linkages is reviewed: the …
Structural basis for 2′-deoxyguanosine recognition by the 2′-dG-II class of riboswitches
MM Matyjasik, RT Batey - Nucleic Acids Research, 2019 - academic.oup.com
A recent bioinformatic analysis of well-characterized classes of riboswitches uncovered
subgroups unable to bind to the regulatory molecule of the parental class. Within the …
subgroups unable to bind to the regulatory molecule of the parental class. Within the …
Conformation-dependent restraints for polynucleotides: I. Clustering of the geometry of the phosphodiester group
The refinement of macromolecular structures is usually aided by prior stereochemical
knowledge in the form of geometrical restraints. Such restraints are also used for the flexible …
knowledge in the form of geometrical restraints. Such restraints are also used for the flexible …
Toward development of epigenetic drugs for central nervous system disorders: Modulating neuroplasticity via H3K4 methylation
The mammalian brain dynamically activates or silences gene programs in response to
environmental input and developmental cues. This neuroplasticity is controlled by signaling …
environmental input and developmental cues. This neuroplasticity is controlled by signaling …
An 1, 4-α-glucosyltransferase defines a new maltodextrin catabolism scheme in Lactobacillus acidophilus
S Andersen, MS Møller, JCN Poulsen… - Applied and …, 2020 - Am Soc Microbiol
The maltooligosaccharide (MOS) utilization locus in Lactobacillus acidophilus NCFM, a
model for human small-intestine lactobacilli, encodes three glycoside hydrolases (GHs): a …
model for human small-intestine lactobacilli, encodes three glycoside hydrolases (GHs): a …
A Noncanonical Metal Center Drives the Activity of the Sediminispirochaeta smaragdinae Metallo-β-lactamase SPS-1
Z Cheng, J VanPelt, A Bergstrom, C Bethel, A Katko… - Biochemistry, 2018 - ACS Publications
In an effort to evaluate whether a recently reported putative metallo-β-lactamase (MβL)
contains a novel MβL active site, SPS-1 from Sediminispirochaeta smaragdinae was …
contains a novel MβL active site, SPS-1 from Sediminispirochaeta smaragdinae was …