Molecular dynamics-driven drug discovery: lea** forward with confidence

A Ganesan, ML Coote, K Barakat - Drug discovery today, 2017 - Elsevier
Highlights•Currently, develo** a market-approved drug costs a staggering $2.6 billion.•In
silico methods have become an important strategy for narrowing down on promising lead …

Rational design of a new antibiotic class for drug-resistant infections

TF Durand-Reville, AA Miller, JP O'Donnell, X Wu… - Nature, 2021 - nature.com
The development of new antibiotics to treat infections caused by drug-resistant Gram-
negative pathogens is of paramount importance as antibiotic resistance continues to …

ETX2514 is a broad-spectrum β-lactamase inhibitor for the treatment of drug-resistant Gram-negative bacteria including Acinetobacter baumannii

TF Durand-Réville, S Guler, J Comita-Prevoir… - Nature …, 2017 - nature.com
Multidrug-resistant (MDR) bacterial infections are a serious threat to public health. Among
the most alarming resistance trends is the rapid rise in the number and diversity of β …

Allele-specific mechanisms of activation of MEK1 mutants determine their properties

Y Gao, MT Chang, D McKay, N Na, B Zhou, R Yaeger… - Cancer discovery, 2018 - AACR
Mutations at multiple sites in MEK1 occur in cancer, suggesting that their mechanisms of
activation might be different. We analyzed 17 tumor-associated MEK1 mutants and found …

[HTML][HTML] Applications of water molecules for analysis of macromolecule properties

K Mitusińska, A Raczyńska, M Bzówka… - Computational and …, 2020 - Elsevier
Water molecules maintain proteins' structures, functions, stabilities and dynamics. They can
occupy certain positions or pass quickly via a protein's interior. Regardless of their …

Structure–kinetic relationships of passive membrane permeation from multiscale modeling

CJ Dickson, V Hornak, RA Pearlstein… - Journal of the American …, 2017 - ACS Publications
Passive membrane permeation of small molecules is essential to achieve the required
absorption, distribution, metabolism, and excretion (ADME) profiles of drug candidates, in …

Solvation thermodynamic map** of molecular surfaces in AmberTools: GIST

S Ramsey, C Nguyen, R Salomon‐Ferrer, RC Walker… - 2016 - Wiley Online Library
The expulsion of water from surfaces upon molecular recognition and nonspecific
association makes a major contribution to the free energy changes of these processes. In …

Identification of a PCSK9-LDLR disruptor peptide with in vivo function

ME Brousseau, KB Clairmont, G Spraggon… - Cell Chemical …, 2022 - cell.com
Proprotein convertase subtilisin/kexin type 9 (PCSK9) regulates plasma low-density
lipoprotein cholesterol (LDL-C) levels by promoting hepatic LDL receptor (LDLR) …

Revealing molecular determinants of hERG blocker and activator binding

CJ Dickson, C Velez-Vega, JS Duca - Journal of chemical …, 2019 - ACS Publications
The Kv11. 1 potassium channel, encoded by the human ether-a-go-go-related gene (hERG),
plays an essential role in the cardiac action potential. hERG blockade by small molecules …

N‐terminal β‐strand in YAP is critical for stronger binding to scalloped relative to TEAD transcription factor

F Bokhovchuk, Y Mesrouze, M Meyerhofer… - Protein …, 2023 - Wiley Online Library
The yes‐associated protein (YAP) regulates the transcriptional activity of the TEAD
transcription factors that are key in the control of organ morphogenesis. YAP interacts with …