Modern microbiology: Embracing complexity through integration across scales

AM Eren, JF Banfield - Cell, 2024 - cell.com
Microbes were the only form of life on Earth for most of its history, and they still account for
the vast majority of life's diversity. They convert rocks to soil, produce much of the oxygen we …

The coral microbiome in sickness, in health and in a changing world

CR Voolstra, JB Raina, M Dörr, A Cárdenas… - Nature Reviews …, 2024 - nature.com
Stony corals, the engines and engineers of reef ecosystems, face unprecedented threats
from anthropogenic environmental change. Corals are holobionts that comprise the …

Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification

EM Adriaenssens, S Roux, JR Brister… - Nature …, 2023 - nature.com
RNA sequencing approaches, including metagenomics, has led to the discovery of a
multitude of uncultivated virus genome sequences 1–12. These sequences improve our …

The evolutionary drivers and correlates of viral host jumps

CCS Tan, L van Dorp, F Balloux - Nature Ecology & Evolution, 2024 - nature.com
Most emerging and re-emerging infectious diseases stem from viruses that naturally
circulate in non-human vertebrates. When these viruses cross over into humans, they can …

Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)

SG Siddell, DB Smith… - Journal of General …, 2023 - microbiologyresearch.org
The taxonomy of viruses is developed and overseen by the International Committee on
Taxonomy of Viruses (ICTV), which scrutinizes, approves and ratifies taxonomic proposals …

Megataxonomy and global ecology of the virosphere

EV Koonin, JH Kuhn, VV Dolja, M Krupovic - The ISME Journal, 2024 - academic.oup.com
Nearly all organisms are hosts to multiple viruses that collectively appear to be the most
abundant biological entities in the biosphere. With recent advances in metagenomics and …

The never-ending battle between lactic acid bacteria and their phages

C Philippe, JK Cornuault, AG de Melo… - FEMS Microbiology …, 2023 - academic.oup.com
Over the past few decades, the interest in lactic acid bacteria (LAB) has been steadily
growing. This is mainly due to their industrial use, their health benefits as probiotic bacteria …

Pending Reorganization of Hantaviridae to Include Only Completely Sequenced Viruses: A Call to Action

JH Kuhn, SB Bradfute, CH Calisher, B Klempa… - Viruses, 2023 - mdpi.com
The official classification of newly discovered or long-known unassigned viruses by the
International Committee on Taxonomy of Viruses (ICTV) requires the deposition of coding …

Taxonomic update for giant viruses in the order Imitervirales (phylum Nucleocytoviricota)

FO Aylward, JS Abrahão, CPD Brussaard… - Archives of …, 2023 - Springer
Large DNA viruses in the phylum Nucleocytoviricota, sometimes referred to as “giant
viruses” owing to their large genomes and virions, have been the subject of burgeoning …

Phylogeny and disease associations of a widespread and ancient intestinal bacteriophage lineage

PA de Jonge, BJH van den Born… - Nature …, 2024 - nature.com
Viruses are core components of the human microbiome, impacting health through
interactions with gut bacteria and the immune system. Most human microbiome viruses are …