Along the allostery stream: Recent advances in computational methods for allosteric drug discovery

D Ni, Z Chai, Y Wang, M Li, Z Yu, Y Liu… - Wiley …, 2022 - Wiley Online Library
Allostery is a universal, biological phenomenon in which orthosteric sites are fine‐tuned by
topologically distal allosteric sites triggered by perturbations, such as ligand binding, residue …

Integrated computational approaches and tools for allosteric drug discovery

O Sheik Amamuddy, W Veldman, C Manyumwa… - International journal of …, 2020 - mdpi.com
Understanding molecular mechanisms underlying the complexity of allosteric regulation in
proteins has attracted considerable attention in drug discovery due to the benefits and …

[HTML][HTML] NMR tools to detect protein allostery

O Gampp, H Kadavath, R Riek - Current Opinion in Structural Biology, 2024 - Elsevier
Allostery is a fundamental mechanism of cellular homeostasis by intra-protein
communication between distinct functional sites. It is an internal process of proteins to steer …

Solution NMR spectroscopy for the study of enzyme allostery

GP Lisi, JP Loria - Chemical reviews, 2016 - ACS Publications
Allostery is a ubiquitous biological regulatory process in which distant binding sites within a
protein or enzyme are functionally and thermodynamically coupled. Allosteric interactions …

Allosteric regulation at the crossroads of new technologies: multiscale modeling, networks, and machine learning

GM Verkhivker, S Agajanian, G Hu… - Frontiers in molecular …, 2020 - frontiersin.org
Allosteric regulation is a common mechanism employed by complex biomolecular systems
for regulation of activity and adaptability in the cellular environment, serving as an effective …

Toward a molecular mechanism for the interaction of ATP with alpha-synuclein

ER Kamski-Hennekam, J Huang, R Ahmed… - Chemical …, 2023 - pubs.rsc.org
The ability of Adenosine Triphosphate (ATP) to modulate protein solubility establishes a
critical link between ATP homeostasis and proteinopathies, such as Parkinson's (PD). The …

Advances in NMR methods to map allosteric sites: from models to translation

S Boulton, G Melacini - Chemical Reviews, 2016 - ACS Publications
The last five years have witnessed major developments in the understanding of the allosteric
phenomenon, broadly defined as coupling between remote molecular sites. Such advances …

Cushing's syndrome driver mutation disrupts protein kinase A allosteric network, altering both regulation and substrate specificity

C Walker, Y Wang, C Olivieri, A Karamafrooz… - Science …, 2019 - science.org
Genetic alterations in the PRKACA gene coding for the catalytic α subunit of the cAMP-
dependent protein kinase A (PKA-C) are linked to cortisol-secreting adrenocortical …

Analysis of coordinated NMR chemical shifts to map allosteric regulatory networks in proteins

E Skeens, GP Lisi - Methods, 2023 - Elsevier
The exquisite sensitivity of the NMR chemical shift to local environment makes it an ideal
probe to assess atomic level perturbations in proteins of all sizes and structural …

Allostery, engineering and inhibition of tryptophan synthase

RN D'Amico, DD Boehr - Current Opinion in Structural Biology, 2023 - Elsevier
The final two steps of tryptophan biosynthesis are catalyzed by the enzyme tryptophan
synthase (TS), composed of alpha (αTS) and beta (βTS) subunits. Recently, experimental …