Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

Oleoresin defenses in conifers: chemical diversity, terpene synthases and limitations of oleoresin defense under climate change

JM Celedon, J Bohlmann - New Phytologist, 2019 - Wiley Online Library
Conifers have evolved complex oleoresin terpene defenses against herbivores and
pathogens. In co‐evolved bark beetles, conifer terpenes also serve chemo‐ecological …

MUMmer4: A fast and versatile genome alignment system

G Marçais, AL Delcher, AM Phillippy… - PLoS computational …, 2018 - journals.plos.org
The MUMmer system and the genome sequence aligner nucmer included within it are
among the most widely used alignment packages in genomics. Since the last major release …

Plant genome sequences: past, present, future

PJ Kersey - Current opinion in plant biology, 2019 - Elsevier
Highlights•Almost 600 complete plant genome assemblies are now available in public
repositories.•New sequencing technologies are producing genome assemblies of …

Genomic architectural variation of plant mitochondria—A review of multichromosomal structuring

ZQ Wu, XZ Liao, XN Zhang… - … of Systematics and …, 2022 - Wiley Online Library
Since the endosymbiont origin from α‐Proteobacteria, mitochondrial genomes have
undergone extremely divergent evolutionary trajectories among eukaryotic lineages …

Siberian larch (Larix sibirica Ledeb.) mitochondrial genome assembled using both short and long nucleotide sequence reads is currently the largest known …

YA Putintseva, EI Bondar, EP Simonov, VV Sharov… - BMC genomics, 2020 - Springer
Background Plant mitochondrial genomes (mitogenomes) can be structurally complex while
their size can vary from~ 222 Kbp in Brassica napus to 11.3 Mbp in Silene conica. To date …

A genome for gnetophytes and early evolution of seed plants

T Wan, ZM Liu, LF Li, AR Leitch, IJ Leitch, R Lohaus… - Nature Plants, 2018 - nature.com
Gnetophytes are an enigmatic gymnosperm lineage comprising three genera, Gnetum,
Welwitschia and Ephedra, which are morphologically distinct from all other seed plants …

A reference genome sequence for giant sequoia

AD Scott, AV Zimin, D Puiu, R Workman… - G3: Genes …, 2020 - academic.oup.com
The giant sequoia (Sequoiadendron giganteum) of California are massive, long-lived trees
that grow along the US Sierra Nevada mountains. Genomic data are limited in giant sequoia …

The Cycas genome and the early evolution of seed plants

Y Liu, S Wang, L Li, T Yang, S Dong, T Wei, S Wu… - Nature Plants, 2022 - nature.com
Cycads represent one of the most ancient lineages of living seed plants. Identifying genomic
features uniquely shared by cycads and other extant seed plants, but not non-seed …

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

TJ Shalev, OG El-Dien, MMS Yuen… - Genome …, 2022 - genome.cshlp.org
We assembled the 9.8-Gbp genome of western redcedar (WRC; Thuja plicata), an
ecologically and economically important conifer species of the Cupressaceae. The genome …