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Keystone taxa as drivers of microbiome structure and functioning
Microorganisms have a pivotal role in the functioning of ecosystems. Recent studies have
shown that microbial communities harbour keystone taxa, which drive community …
shown that microbial communities harbour keystone taxa, which drive community …
From hairballs to hypotheses–biological insights from microbial networks
Microbial networks are an increasingly popular tool to investigate microbial community
structure, as they integrate multiple types of information and may represent systems-level …
structure, as they integrate multiple types of information and may represent systems-level …
[HTML][HTML] Network analysis methods for studying microbial communities: A mini review
MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …
in complex and contiguous environments. They engage in numerous inter-and intra …
Correlation and association analyses in microbiome study integrating multiomics in health and disease
Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …
research fields, including microbiome and integrative multiomics studies. Correlation and …
Disentangling interactions in the microbiome: a network perspective
Microbiota are now widely recognized as being central players in the health of all organisms
and ecosystems, and subsequently have been the subject of intense study. However …
and ecosystems, and subsequently have been the subject of intense study. However …
Geographic patterns of co-occurrence network topological features for soil microbiota at continental scale in eastern China
Soil microbiota play a critical role in soil biogeochemical processes and have a profound
effect on soil functions. Recent studies have revealed microbial co-occurrence patterns in …
effect on soil functions. Recent studies have revealed microbial co-occurrence patterns in …
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
Disruption of healthy microbial communities has been linked to numerous diseases, yet
microbial interactions are little understood. This is due in part to the large number of …
microbial interactions are little understood. This is due in part to the large number of …
Hyperthermophilic composting accelerates the removal of antibiotic resistance genes and mobile genetic elements in sewage sludge
Composting is an efficient way to convert organic waste into fertilizers. However, waste
materials often contain large amounts of antibiotic resistance genes (ARGs) and mobile …
materials often contain large amounts of antibiotic resistance genes (ARGs) and mobile …
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Co-occurrence networks produced from microbial survey sequencing data are frequently
used to identify interactions between community members. While this approach has …
used to identify interactions between community members. While this approach has …
Life in the “plastisphere”: microbial communities on plastic marine debris
Plastics are the most abundant form of marine debris, with global production rising and
documented impacts in some marine environments, but the influence of plastic on open …
documented impacts in some marine environments, but the influence of plastic on open …