Introduction Continuous advances in mass spectrometry (MS) technologies have enabled
deeper and more reproducible proteome characterization and a better understanding of …

Transcriptional regulatory networks (TRNs) play a crucial role in exploring microbial life
activities and complex regulatory mechanisms. The comprehensive reconstruction of TRNs …

Fast growth phenotypes are achieved through optimal transcriptomic allocation, in which
cells must balance tradeoffs in resource allocation between diverse functions. One such …

Fast growth phenotypes are achieved through optimal transcriptomic allocation, in which
cells must balance tradeoffs in resource allocation between diverse functions. One such …

Diverse microbial species utilize redox shuttles to exchange electrons with their environment
through mediated extracellular electron transfer (EET). This process maintains redox …

We develop a systems approach based on an energy-landscape concept to differentiate
interactions involving redox activities and conformational changes of proteins and nucleic …

We present TXpredict, a transformer-based framework for predicting microbial
transcriptomes using annotated genome sequences. By leveraging information learned from …

Transcriptional gene regulation is a primary mechanism that Escherichia coli uses to best
adapt to its current environment. RNA-sequencing data in particular provides us with the …

Gravity is a fundamental driving force of plant evolution, profoundly influencing numerous
developmental and growth processes in plants. Gravity's most evident impact is the …