Diversity, ecology and evolution of Archaea

BJ Baker, V De Anda, KW Seitz, N Dombrowski… - Nature …, 2020 - nature.com
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …

Bathyarchaeota: globally distributed metabolic generalists in anoxic environments

Z Zhou, J Pan, F Wang, JD Gu… - FEMS microbiology …, 2018 - academic.oup.com
Bathyarchaeota, formerly known as the Miscellaneous Crenarchaeotal Group, is a phylum of
global generalists that are widespread in anoxic sediments, which host relatively high …

The biomass distribution on Earth

YM Bar-On, R Phillips, R Milo - Proceedings of the National Academy of …, 2018 - pnas.org
A census of the biomass on Earth is key for understanding the structure and dynamics of the
biosphere. However, a global, quantitative view of how the biomass of different taxa …

The SILVA and “all-species living tree project (LTP)” taxonomic frameworks

P Yilmaz, LW Parfrey, P Yarza, J Gerken… - Nucleic acids …, 2014 - academic.oup.com
SILVA (from Latin silva, forest, http://www. arb-silva. de) is a comprehensive resource for up-
to-date quality-controlled databases of aligned ribosomal RNA (rRNA) gene sequences from …

Insights into the phylogeny and coding potential of microbial dark matter

C Rinke, P Schwientek, A Sczyrba, NN Ivanova… - Nature, 2013 - nature.com
Genome sequencing enhances our understanding of the biological world by providing
blueprints for the evolutionary and functional diversity that shapes the biosphere. However …

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

C Quast, E Pruesse, P Yilmaz, J Gerken… - Nucleic acids …, 2012 - academic.oup.com
SILVA (from Latin silva, forest, http://www. arb-silva. de) is a comprehensive web resource
for up to date, quality-controlled databases of aligned ribosomal RNA (rRNA) gene …

[HTML][HTML] The bright side of microbial dark matter: lessons learned from the uncultivated majority

L Solden, K Lloyd, K Wrighton - Current opinion in microbiology, 2016 - Elsevier
Highlights•Recent discoveries from metagenomics and single cell genomics.•Metabolic
features of the uncultivated majority.•Success stories of cultivating microbial dark …

Microbial ecology of the dark ocean above, at, and below the seafloor

BN Orcutt, JB Sylvan, NJ Knab… - … and molecular biology …, 2011 - journals.asm.org
The majority of life on Earth—notably, microbial life—occurs in places that do not receive
sunlight, with the habitats of the oceans being the largest of these reservoirs. Sunlight …

Genomic diversity, lifestyles and evolutionary origins of DPANN archaea

N Dombrowski, JH Lee, TA Williams… - FEMS microbiology …, 2019 - academic.oup.com
Archaea—a primary domain of life besides Bacteria—have for a long time been regarded as
peculiar organisms that play marginal roles in biogeochemical cycles. However, this picture …

[LLIBRE][B] Introduction to geomicrobiology

KO Konhauser - 2009 - books.google.com
Introduction to Geomicrobiology is a timely and comprehensive overview of how microbial
life has affected Earth's environment through time. It shows how the ubiquity of …