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[HTML][HTML] The central role of transcription factors in bridging biotic and abiotic stress responses for plants' resilience
F Liu, M ** their downstream gene
networks are key challenges in systems biology. We developed a computational method …
networks are key challenges in systems biology. We developed a computational method …
Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders
Genetic and genomic approaches have implicated hundreds of genetic loci in
neurodevelopmental disorders and neurodegeneration, but mechanistic understanding …
neurodevelopmental disorders and neurodegeneration, but mechanistic understanding …
Improving fatty acids production by engineering dynamic pathway regulation and metabolic control
Global energy demand and environmental concerns have stimulated increasing efforts to
produce carbon-neutral fuels directly from renewable resources. Microbially derived …
produce carbon-neutral fuels directly from renewable resources. Microbially derived …
ChIP–seq: advantages and challenges of a maturing technology
PJ Park - Nature reviews genetics, 2009 - nature.com
Chromatin immunoprecipitation followed by sequencing (ChIP–seq) is a technique for
genome-wide profiling of DNA-binding proteins, histone modifications or nucleosomes …
genome-wide profiling of DNA-binding proteins, histone modifications or nucleosomes …
Gene regulatory network inference resources: A practical overview
Transcriptional regulation is a fundamental molecular mechanism involved in almost every
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …
Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments
Recent advances in technology have led to a dramatic increase in the number of available
transcription factor ChIP-seq and ChIP-chip data sets. Understanding the motif content of …
transcription factor ChIP-seq and ChIP-chip data sets. Understanding the motif content of …
MEME: discovering and analyzing DNA and protein sequence motifs
Abstract MEME (Multiple EM for Motif Elicitation) is one of the most widely used tools for
searching for novel 'signals' in sets of biological sequences. Applications include the …
searching for novel 'signals' in sets of biological sequences. Applications include the …
Quantifying similarity between motifs
S Gupta, JA Stamatoyannopoulos, TL Bailey… - Genome biology, 2007 - Springer
A common question within the context of de novo motif discovery is whether a newly
discovered, putative motif resembles any previously discovered motif in an existing …
discovered, putative motif resembles any previously discovered motif in an existing …