Microbial and animal rhodopsins: structures, functions, and molecular mechanisms

OP Ernst, DT Lodowski, M Elstner, P Hegemann… - Chemical …, 2014 - ACS Publications
Organisms of all domains of life use photoreceptor proteins to sense and respond to light.
The light-sensitivity of photoreceptor proteins arises from bound chromophores such as …

Chemical dynamics in proteins: the photoisomerization of retinal in bacteriorhodopsin

F Gai, KC Hasson, JC McDonald, PA Anfinrud - Science, 1998 - science.org
Chemical dynamics in proteins are discussed, with bacteriorhodopsin serving as a model
system. Ultrafast time-resolved methods used to probe the chemical dynamics of retinal …

Real-time spectroscopy of transition states in bacteriorhodopsin during retinal isomerization

T Kobayashi, T Saito, H Ohtani - Nature, 2001 - nature.com
Real-time investigations of the rearrangement of bonds during chemical transformations
require femtosecond temporal resolution, so that the atomic vibrations within the reacting …

Simple, efficient, and modular syntheses of polyene natural products via iterative cross-coupling

SJ Lee, KC Gray, JS Paek… - Journal of the American …, 2008 - ACS Publications
This communication describes the discovery of air-stable and highly versatile B-protected
haloalkenylboronic acid building blocks for iterative cross-coupling. These reagents enable …

Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization

R González-Luque, M Garavelli, F Bernardi… - Proceedings of the …, 2000 - pnas.org
In this paper we use ab initio multiconfigurational second-order perturbation theory to
establish the intrinsic photoisomerization path model of retinal chromophores. This is …

Femtosecond studies of solvation and intramolecular configurational dynamics of fluorophores in liquid solution

M Glasbeek, H Zhang - Chemical reviews, 2004 - ACS Publications
Fluorescent chromophores are optically active probe molecules with widespread
applications in chemistry and biology. Usually chromophores function in condensed matter …

Structure, initial excited-state relaxation, and energy storage of rhodopsin resolved at the multiconfigurational perturbation theory level

T Andruniów, N Ferré, M Olivucci - … of the National Academy of Sciences, 2004 - pnas.org
We demonstrate that a “brute force” quantum chemical calculation based on an ab initio
multiconfigurational second order perturbation theory approach implemented in a quantum …

Ultrafast radiationless deactivation of organic dyes: evidence for a two-state two-mode pathway in polymethine cyanines

A Sanchez-Galvez, P Hunt, MA Robb… - Journal of the …, 2000 - ACS Publications
CASSCF quantum chemical calculations (including dynamics) have been used to
investigate the ultrafast photoisomerization of three symmetric cyanine dye models of …

Kinetic analysis of complex chemical activation and unimolecular dissociation reactions using QRRK theory and the modified strong collision approximation

AY Chang, JW Bozzelli, AM Dean - 2000 - degruyter.com
A method to predict temperature and pressure-dependent rate coefficients for complex
bimolecular chemical activation and unimolecular dissociation reactions is described. A …

Probing the rhodopsin cavity with reduced retinal models at the CASPT2//CASSCF/AMBER level of theory

N Ferré, M Olivucci - Journal of the American Chemical Society, 2003 - ACS Publications
We show that the ab initio CASPT2//CASSCF strategy previously used to investigate the
ground and excited states of the chromophore of the vision receptor rhodopsin (Rh) in vacuo …