The evolutionary origin of orphan genes

D Tautz, T Domazet-Lošo - Nature Reviews Genetics, 2011 - nature.com
Gene evolution has long been thought to be primarily driven by duplication and
rearrangement mechanisms. However, every evolutionary lineage harbours orphan genes …

Structural and functional discussion of the tetra-trico-peptide repeat, a protein interaction module

N Zeytuni, R Zarivach - Structure, 2012 - cell.com
Tetra-trico-peptide repeat (TPR) domains are found in numerous proteins, where they serve
as interaction modules and multiprotein complex mediators. TPRs can be found in all …

Protein sequence analysis using the MPI bioinformatics toolkit

F Gabler, SZ Nam, S Till, M Mirdita… - Current Protocols in …, 2020 - Wiley Online Library
Abstract The MPI Bioinformatics Toolkit (https://toolkit. tuebingen. mpg. de) provides
interactive access to a wide range of the best‐performing bioinformatics tools and …

A completely reimplemented MPI bioinformatics toolkit with a new HHpred server at its core

L Zimmermann, A Stephens, SZ Nam, D Rau… - Journal of molecular …, 2018 - Elsevier
Abstract The MPI Bioinformatics Toolkit (https://toolkit. tuebingen. mpg. de) is a free, one-stop
web service for protein bioinformatic analysis. It currently offers 34 interconnected external …

Assessing the utility of coevolution-based residue–residue contact predictions in a sequence-and structure-rich era

H Kamisetty, S Ovchinnikov… - Proceedings of the …, 2013 - National Acad Sciences
Recently developed methods have shown considerable promise in predicting residue–
residue contacts in protein 3D structures using evolutionary covariance information …

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

V Alva, SZ Nam, J Söding, AN Lupas - Nucleic acids research, 2016 - academic.oup.com
Abstract The MPI Bioinformatics Toolkit (http://toolkit. tuebingen. mpg. de) is an open,
interactive web service for comprehensive and collaborative protein bioinformatic analysis. It …

X-Linked TEX11 Mutations, Meiotic Arrest, and Azoospermia in Infertile Men

AN Yatsenko, AP Georgiadis, A Röpke… - … England Journal of …, 2015 - Mass Medical Soc
Background The genetic basis of nonobstructive azoospermia is unknown in the majority of
infertile men. Methods We performed array comparative genomic hybridization testing in …

Coordinated regulation of accessory genetic elements produces cyclic di-nucleotides for V. cholerae virulence

BW Davies, RW Bogard, TS Young, JJ Mekalanos - Cell, 2012 - cell.com
The function of the Vibrio 7 th pandemic island-1 (VSP-1) in cholera pathogenesis has
remained obscure. Utilizing chromatin immunoprecipitation sequencing and RNA …

Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA

D Theler, C Dominguez, M Blatter, J Boudet… - Nucleic acids …, 2014 - academic.oup.com
N6A methylation is the most abundant RNA modification occurring within messenger RNA.
Impairment of methylase or demethylase functions are associated with severe phenotypes …

Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling

M Clarke, AJ Lohan, B Liu, I Lagkouvardos, S Roy… - Genome biology, 2013 - Springer
Abstract Background The Amoebozoa constitute one of the primary divisions of eukaryotes,
encompassing taxa of both biomedical and evolutionary importance, yet its genomic …