Acquiring COTS software selection requirements
NA Maiden, C Ncube - IEEE software, 1998 - ieeexplore.ieee.org
Commercial off the shelf software can save development time and money if you can find a
package that meets your customer's needs. The authors propose a model for matching …
package that meets your customer's needs. The authors propose a model for matching …
NCBI BLASTP on high-performance reconfigurable computing systems
A Mahram, MC Herbordt - ACM Transactions on Reconfigurable …, 2015 - dl.acm.org
The BLAST sequence alignment program is a central application in bioinformatics. The de
facto standard version, NCBI BLAST, uses complex heuristics that make it challenging to …
facto standard version, NCBI BLAST, uses complex heuristics that make it challenging to …
Fast and accurate NCBI BLASTP: Acceleration with multiphase FPGA-based prefiltering
A Mahram, MC Herbordt - Proceedings of the 24th ACM International …, 2010 - dl.acm.org
NCBI BLAST has become the de facto standard in bioinformatic approximate string matching
and so its acceleration is of fundamental importance. The problem is that it uses complex …
and so its acceleration is of fundamental importance. The problem is that it uses complex …
Reconfigurable acceleration of genetic sequence alignment: A survey of two decades of efforts
Genetic sequence alignment has always been a computational challenge in bioinformatics.
Depending on the problem size, software-based aligners can take multiple CPU-days to …
Depending on the problem size, software-based aligners can take multiple CPU-days to …
An effective framework to evaluate dynamic partial reconfiguration in FPGA systems
K Papadimitriou, A Anyfantis… - IEEE Transactions on …, 2010 - ieeexplore.ieee.org
The most popular representative devices of reconfigurable computing are field-
programmable gate arrays (FPGAs). A promising feature of an FPGA is the ability to reuse …
programmable gate arrays (FPGAs). A promising feature of an FPGA is the ability to reuse …
Introduction to Silk/sup TM/and Java-based simulation
KJ Healy, RA Kilgore - 1998 Winter Simulation Conference …, 1998 - ieeexplore.ieee.org
Silk is a general-purpose simulation language based on the Java programming language.
Silk, however, is more than just another simulation language. It is a new standard for …
Silk, however, is more than just another simulation language. It is a new standard for …
FPGA-based hardware acceleration for local complexity analysis of massive genomic data
While genomics have significantly advanced modern biological achievements, it requires
extensive computational power, traditionally employed on large-scale cluster machines as …
extensive computational power, traditionally employed on large-scale cluster machines as …
CAAD BLASTP: NCBI BLASTP Accelerated With FPGA-Based Accelerated Pre-Filtering
JH Park, Y Qiu, MC Herbordt - 2009 17th IEEE Symposium on …, 2009 - ieeexplore.ieee.org
NCBI BLAST has become the de facto standard in bioinformatic approximate string matching
and so its acceleration is of fundamental importance. The problem is that it uses complex …
and so its acceleration is of fundamental importance. The problem is that it uses complex …
[PDF][PDF] FPGA acceleration of DNA sequence alignment: Design analysis and optimization
HC Ng - 2021 - core.ac.uk
Existing FPGA accelerators for short read map** often fail to utilize the complete biological
information in sequencing data for simple hardware design, leading to missed or incorrect …
information in sequencing data for simple hardware design, leading to missed or incorrect …
CAAD BLASTP 2.0: NCBI BLASTP accelerated with pipelined filters
A Mahram, MC Herbordt - 22nd International Conference on …, 2012 - ieeexplore.ieee.org
BLAST is a central application in bioinformatics and so has been the subject of numerous
acceleration studies. The de facto standard version of this code, NCBI BLAST, uses complex …
acceleration studies. The de facto standard version of this code, NCBI BLAST, uses complex …