Machine learning for functional protein design

P Notin, N Rollins, Y Gal, C Sander, D Marks - Nature biotechnology, 2024‏ - nature.com
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …

Droplet-based microfluidics

T Moragues, D Arguijo, T Beneyton, C Modavi… - Nature Reviews …, 2023‏ - nature.com
Droplet-based microfluidic systems generate, manipulate and control sub-microlitre droplets
enclosed within an immiscible carrier fluid. Owing to a number of remarkable features, such …

Real-time detection of 20 amino acids and discrimination of pathologically relevant peptides with functionalized nanopore

M Zhang, C Tang, Z Wang, S Chen, D Zhang, K Li… - Nature …, 2024‏ - nature.com
Precise identification and quantification of amino acids is crucial for many biological
applications. Here we report a copper (II)-functionalized Mycobacterium smegmatis porin A …

An introduction to mass spectrometry-based proteomics

SR Shuken - Journal of proteome research, 2023‏ - ACS Publications
Mass spectrometry is unmatched in its versatility for studying practically any aspect of the
proteome. Because the foundations of mass spectrometry-based proteomics are complex …

Peptide sequencing based on host–guest interaction-assisted nanopore sensing

Y Zhang, Y Yi, Z Li, K Zhou, L Liu, HC Wu - Nature methods, 2024‏ - nature.com
Direct protein sequencing technologies with improved sensitivity and throughput are still
needed. Here, we propose an alternative method for peptide sequencing based on …

Nanopore DNA sequencing technologies and their applications towards single-molecule proteomics

A Dorey, S Howorka - Nature chemistry, 2024‏ - nature.com
Sequencing of nucleic acids with nanopores has emerged as a powerful tool offering rapid
readout, high accuracy, low cost and portability. This label-free method for sequencing at the …

Multiple rereads of single proteins at single–amino acid resolution using nanopores

H Brinkerhoff, ASW Kang, J Liu, A Aksimentiev… - Science, 2021‏ - science.org
A proteomics tool capable of identifying single proteins would be important for cell biology
research and applications. Here, we demonstrate a nanopore-based single-molecule …

Spatially resolved single-cell translatomics at molecular resolution

H Zeng, J Huang, J Ren, CK Wang, Z Tang, H Zhou… - Science, 2023‏ - science.org
The precise control of messenger RNA (mRNA) translation is a crucial step in
posttranscriptional gene regulation of cellular physiology. However, it remains a challenge …

Multi-pass, single-molecule nanopore reading of long protein strands

K Motone, D Kontogiorgos-Heintz, J Wee, K Kurihara… - Nature, 2024‏ - nature.com
The ability to sequence single protein molecules in their native, full-length form would
enable a more comprehensive understanding of proteomic diversity. Current technologies …

Proteomic landscape of Alzheimer's Disease: novel insights into pathogenesis and biomarker discovery

B Bai, D Vanderwall, Y Li, X Wang, S Poudel… - Molecular …, 2021‏ - Springer
Mass spectrometry-based proteomics empowers deep profiling of proteome and protein
posttranslational modifications (PTMs) in Alzheimer's disease (AD). Here we review the …